Evidence map›Paper›PMID 39190503›Full record

ArticleJournal of synchrotron radiation2024

RefXAS: an open access database of X-ray absorption spectra.

Sebastian Paripsa, Abhijeet Gaur, Frank Förste, Dmitry E Doronkin, Wolfgang Malzer, Christopher Schlesiger, Birgit Kanngießer, Edmund Welter, Jan Dierk Grunwaldt, Dirk Lützenkirchen-Hecht

Abstract read
In one paragraph

Article in Journal of synchrotron radiation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Ce, Gd and Yb accumulation in microalgae: an L-edge XAS study.Acta crystallographica. Section C, Structural chemistry · 2025
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sebastian ParipsaFk. 4, Physik, Bergische Universität Wuppertal, Gaußstraße 20, D-42097 Wuppertal, Germany.
Abhijeet GaurInstitute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstraße 20, D-76131 Karlsruhe, Germany.ORCID 0000-0001-5328-9280
Frank FörsteTechnische Universität Berlin, Hardenbergstraße 36, D-10623 Berlin, Germany.
Dmitry E DoronkinInstitute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstraße 20, D-76131 Karlsruhe, Germany.ORCID 0000-0003-3930-3204
Wolfgang MalzerTechnische Universität Berlin, Hardenbergstraße 36, D-10623 Berlin, Germany.
Christopher SchlesigerTechnische Universität Berlin, Hardenbergstraße 36, D-10623 Berlin, Germany.
Birgit KanngießerTechnische Universität Berlin, Hardenbergstraße 36, D-10623 Berlin, Germany.
Edmund WelterDeutsches Elektronen-Synchrotron (DESY), Notkestraße 85, D-22607 Hamburg, Germany.ORCID 0000-0003-0698-3151
Jan Dierk GrunwaldtInstitute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, Engesserstraße 20, D-76131 Karlsruhe, Germany.ORCID 0000-0003-3606-0956
Dirk Lützenkirchen-HechtFk. 4, Physik, Bergische Universität Wuppertal, Gaußstraße 20, D-42097 Wuppertal, Germany.

Funding

Deutsche Forschungsgemeinschaft 460248799
6 · The paper itself

Abstract

Under DAPHNE4NFDI, the X-ray absorption spectroscopy (XAS) reference database, RefXAS, has been set up. For this purpose, we developed a method to enable users to submit a raw dataset, with its associated metadata, via a dedicated website for inclusion in the database. Implementation of the database includes an upload of metadata to the scientific catalogue and an upload of files via object storage, with automated query capabilities through a web server and visualization of the data and files. Based on the mode of measurements, quality criteria have been formulated for the automated check of any uploaded data. In the present work, the significant metadata fields for reusability, as well as reproducibility of results (FAIR data principles), are discussed. Quality criteria for the data uploaded to the database have been formulated and assessed. Moreover, the usability and interoperability of available XAS data/file formats have been explored. The first version of the RefXAS database prototype is presented, which features a human verification procedure, currently being tested with a new user interface designed specifically for curators; a user-friendly landing page; a full list of datasets; advanced search capabilities; a streamlined upload process; and, finally, a server-side automatic authentication and (meta-) data storage via MongoDB, PostgreSQL and (data-) files via relevant APIs.

Indexed as

data formatmetadataquality controlreference databaseX-ray absorption fine structure

Identifiers

PMID39190503
PMCPMC11371060

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.