Evidence map›Paper›PMID 39190362›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Imprinted X chromosome inactivation in marsupials: The paternal X arrives at the egg with a silent DNA methylation profile.

Ashley M Milton, Laia Marín-Gual, Nicholas C Lister, Kim L McIntyre, Patrick G S Grady, Melanie K Laird, Donna M Bond, Timothy A Hore, Rachel J O'Neill, Andrew J Pask and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ashley M MiltonSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, The University of New South Wales, Sydney, NSW 2052, Australia.ORCID 0000-0002-2847-2777
Laia Marín-GualDepartament de Biologia Cellular, Fisiologia i Immunologia, Universitat Autònoma de Barcelona, Cerdanyola del Vallès 08193, Spain.ORCID 0000-0003-1480-0976
Nicholas C ListerSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, The University of New South Wales, Sydney, NSW 2052, Australia.ORCID 0000-0002-6597-4784
Kim L McIntyreSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, The University of New South Wales, Sydney, NSW 2052, Australia.
Patrick G S GradyDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269.
Melanie K LairdDepartment of Anatomy, University of Otago, Dunedin 9016, New Zealand.
Donna M BondDepartment of Anatomy, University of Otago, Dunedin 9016, New Zealand.
Timothy A HoreDepartment of Anatomy, University of Otago, Dunedin 9016, New Zealand.ORCID 0000-0002-6735-225X
Rachel J O'NeillDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06269.
Andrew J PaskSchool of BioSciences, The University of Melbourne, Parkville, VIC 3010, Australia.ORCID 0000-0002-1900-2263
Marilyn B RenfreeSchool of BioSciences, The University of Melbourne, Parkville, VIC 3010, Australia.ORCID 0000-0002-4589-0436
Aurora Ruiz-HerreraDepartament de Biologia Cellular, Fisiologia i Immunologia, Universitat Autònoma de Barcelona, Cerdanyola del Vallès 08193, Spain.ORCID 0000-0003-3868-6151
Paul D WatersSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, The University of New South Wales, Sydney, NSW 2052, Australia.ORCID 0000-0002-4689-8747

Funding

Agencia de Gestio d'Ajuts Universitaris i de Recerca 2021SGR00122Australian Research Council DP210103512Australian Research Council DP220101429National Health and Medical Research Council 2021172Spanish Ministry of Science and Innovation PID2020-112557 GB-I00
6 · The paper itself

Abstract

X chromosome inactivation (XCI) is an epigenetic process that results in the transcriptional silencing of one X chromosome in the somatic cells of females. This phenomenon is common to both eutherian and marsupial mammals, but there are fundamental differences. In eutherians, the X chosen for silencing is random. DNA methylation on the eutherian inactive X is high at transcription start sites (TSSs) and their flanking regions, resulting in universally high DNA methylation. This contrasts XCI in marsupials where the paternally derived X is always silenced, and in which DNA methylation is low at TSSs and flanking regions. Here, we examined the DNA methylation status of the tammar wallaby X chromosome during spermatogenesis to determine the DNA methylation profile of the paternal X prior to and at fertilization. Whole genome enzymatic methylation sequencing was carried out on enriched flow-sorted populations of premeiotic, meiotic, and postmeiotic cells. We observed that the X displayed a pattern of DNA methylation from spermatogonia to mature sperm that reflected the inactive X in female somatic tissue. Therefore, the paternal X chromosome arrives at the egg with a DNA methylation profile that reflects the transcriptionally silent X in adult female somatic tissue. We present this epigenetic signature as a candidate for the long sought-after imprint for paternal XCI in marsupials.

Indexed as

DNA MethylationX ChromosomeX Chromosome InactivationAnimalsEpigenesis, GeneticFemaleGenomic ImprintingMacropodidaeMaleMarsupialiaOvumSpermatogenesisSpermatozoaDNA methylationimprintingmarsupialspermatogenesisX chromosome inactivation

Identifiers

PMID39190362
PMCPMC11388282

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.