Evidence map›Paper›PMID 39190347›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Orientation-independent-DIC imaging reveals that a transient rise in depletion attraction contributes to mitotic chromosome condensation.

Shiori Iida, Satoru Ide, Sachiko Tamura, Masaki Sasai, Tomomi Tani, Tatsuhiko Goto, Michael Shribak, Kazuhiro Maeshima

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Chromatin Packing Domain Engineering Through the Manipulation of Nuclear Cationic States.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Mitotic genome folding.The Journal of cell biology · 2025
    Review
  10. The shifting paradigm of chromatin structure: from the 30-nm chromatin fiber to liquid-like organization.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
  11. Review
  12. Article
  13. Review
  14. Live-cell imaging under centrifugation characterized the cellular force for nuclear centration in theProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Shiori IidaGenome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0002-1115-4705
Satoru IdeGenome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0002-6640-1646
Sachiko TamuraGenome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Masaki SasaiFukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan.ORCID 0000-0002-1028-8242
Tomomi TaniBiomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka 563-8577, Japan.ORCID 0000-0003-4472-7714
Tatsuhiko GotoResearch Center for Global Agromedicine, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Hokkaido 080-8555, Japan.ORCID 0000-0002-1787-7533
Michael ShribakMarine Biological Laboratory, Woods Hole, MA 02543.ORCID 0000-0002-5849-6294
Kazuhiro MaeshimaGenome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0003-3909-0341

Funding

Orientation Independent DIC and Polarization MicroscopyR01GM101701 · NIGMS · MARINE BIOLOGICAL LABORATORY · PI SHRIBAK, MICHAEL · 2012 to 2020
$3.8M
CSRD VA 1HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01GM101701MEXT | Japan Society for the Promotion of Science (JSPS) JP20H05936MEXT | Japan Society for the Promotion of Science (JSPS) JP21H02453MEXT | Japan Society for the Promotion of Science (JSPS) JP21H02535MEXT | Japan Society for the Promotion of Science (JSPS) JP22H00406MEXT | Japan Society for the Promotion of Science (JSPS) JP22H05606MEXT | Japan Society for the Promotion of Science (JSPS) JP23K17398MEXT | Japan Society for the Promotion of Science (JSPS) JP23KJ0996MEXT | Japan Society for the Promotion of Science (JSPS) JP24H00061MEXT | JST | Support for Pioneering Research Initiated by the Next Generation JPMJSP2104NIGMS NIH HHS R01 GM101701
6 · The paper itself

Abstract

Genomic information must be faithfully transmitted into two daughter cells during mitosis. To ensure the transmission process, interphase chromatin is further condensed into mitotic chromosomes. Although protein factors like condensins and topoisomerase IIα are involved in the assembly of mitotic chromosomes, the physical bases of the condensation process remain unclear. Depletion attraction/macromolecular crowding, an effective attractive force that arises between large structures in crowded environments around chromosomes, may contribute to the condensation process. To approach this issue, we investigated the "chromosome milieu" during mitosis of living human cells using an orientation-independent-differential interference contrast module combined with a confocal laser scanning microscope, which is capable of precisely mapping optical path differences and estimating molecular densities. We found that the molecular density surrounding chromosomes increased with the progression from prophase to anaphase, concurring with chromosome condensation. However, the molecular density went down in telophase, when chromosome decondensation began. Changes in the molecular density around chromosomes by hypotonic or hypertonic treatment consistently altered the condensation levels of chromosomes. In vitro, native chromatin was converted into liquid droplets of chromatin in the presence of cations and a macromolecular crowder. Additional crowder made the chromatin droplets stiffer and more solid-like. These results suggest that a transient rise in depletion attraction, likely triggered by the relocation of macromolecules (proteins, RNAs, and others) via nuclear envelope breakdown and by a subsequent decrease in cell volumes, contributes to mitotic chromosome condensation, shedding light on a different aspect of the condensation mechanism in living human cells.

Indexed as

ChromatinChromosomes, HumanMitosisAdenosine TriphosphatasesDNA-Binding ProteinsHeLa CellsHumansMicroscopy, ConfocalMultiprotein ComplexesAdenosine TriphosphatasesChromatincondensin complexesDNA-Binding ProteinsMultiprotein Complexeschromatindepletion attractionliquid dropletsmitotic chromosome condensationOI-DIC

Identifiers

PMID39190347
PMCPMC11388287

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.