Evidence map›Paper›PMID 39190201›Full record

ArticleDiscover oncology2024

Optimized workflow of EV enrichment from human plasma samples for downstream mass spectrometry analysis.

Patrick Erwied, Yi Gu, Lena Simon, Martin Schneider, Dominic Helm, Maurice Stefan Michel, Philipp Nuhn, Katja Nitschke, Thomas Stefan Worst

Abstract read
In one paragraph

Article in Discover oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Patrick ErwiedDepartment of Urology and Urosurgery, Medical Faculty Mannheim of the University of Heidelberg, Mannheim, Germany.
Yi GuDepartment of Urology and Urosurgery, Medical Faculty Mannheim of the University of Heidelberg, Mannheim, Germany.
Lena SimonDepartment of Urology and Urosurgery, Medical Faculty Mannheim of the University of Heidelberg, Mannheim, Germany.
Martin SchneiderProteomics Core Facility, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Dominic HelmProteomics Core Facility, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Maurice Stefan MichelDepartment of Urology and Urosurgery, Medical Faculty Mannheim of the University of Heidelberg, Mannheim, Germany.
Philipp NuhnDepartment of Urology, Universitätsklinikum Schleswig-Holstein (UKSH), Campus Kiel, Kiel, Germany.
Katja Nitschke *Department of Urology and Urosurgery, Medical Faculty Mannheim of the University of Heidelberg, Mannheim, Germany.
Thomas Stefan Worst *Department of Urology and Urosurgery, Medical Faculty Mannheim of the University of Heidelberg, Mannheim, Germany. thomas.worst@medma.uni-heidelberg.de.ORCID http://orcid.org/0000-0001-5429-126X

Funding

Hector Stiftung II M2096
6 · The paper itself

Abstract

To improve the prognosis of bladder and prostate cancer, highly specific and sensitive biomarkers are needed for early detection, prognosis prediction, and therapeutic stratification. Extracellular vesicles (EV) from plasma could fill this gap due to their potential to serve as cancer biomarkers. However, the enrichment of EV is a major challenge, because the highly abundant plasma proteins are interfering with analytical downstream applications like mass spectrometry (MS). Therefore, the purity requirements of the EV samples must be carefully considered when selecting or developing a suitable EV enrichment method. The aim of this study was to compare a self-designed EV enrichment method based on density cushion centrifugation (DCC) combined with size exclusion chromatography (SEC) and concentration (method 1) with the exoRNeasy midi kit from Qiagen (method 2) and with unprocessed plasma. Furthermore, the single steps of method 1 were evaluated for their effectiveness to enrich EV from plasma. The results showed that the EV samples enriched with method 1 contained the highest levels of EV and exosome markers with simultaneously low levels of highly abundant plasma proteins. In summary, the combination of DCC, SEC and concentration proved to be a promising approach to discover EV-based biomarkers from plasma of cancer patients.

Identifiers

PMID39190201
PMCPMC11349724

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.