Evidence map›Paper›PMID 39189258›Full record

ArticleEpigenomes2024

Genome-Wide Methylation Profiling of Peripheral T-Cell Lymphomas Identifies TRIP13 as a Critical Driver of Tumor Proliferation and Survival.

Pawel Nowialis, Julian Tobon, Katarina Lopusna, Jana Opavska, Arshee Badar, Duo Chen, Reem Abdelghany, Gene Pozas, Jacob Fingeret, Emma Noel and 4 more

Abstract read
In one paragraph

Article in Epigenomes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Pawel NowialisDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.ORCID 0009-0001-9075-6252
Julian TobonDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.
Katarina LopusnaDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.
Jana OpavskaDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.
Arshee BadarDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.
Duo ChenDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.
Reem AbdelghanyUF College of Liberal Arts and Sciences, University of Florida, Gainesville, FL 32610, USA.
Gene PozasUF College of Liberal Arts and Sciences, University of Florida, Gainesville, FL 32610, USA.
Jacob FingeretUF College of Liberal Arts and Sciences, University of Florida, Gainesville, FL 32610, USA.
Emma NoelCollege of Agriculture and Life Sciences, University of Florida, Gainesville, FL 32610, USA.
Alberto RivaICBR Bioinformatics, Cancer and Genetics Research Complex, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0001-9150-8333
Hiroshi FujiwaraDepartment of Hematology, Clinical Immunology, and Infectious Diseases, Ehime University Graduate School of Medicine, Toon 791-0295, Japan.ORCID 0000-0003-3340-6915
Alexander IshovDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.ORCID 0000-0002-8823-8640
Rene OpavskyDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, FL 32610, USA.

Funding

Dnmt3b activities in mouse developmentR01GM145745 · NIGMS · UNIVERSITY OF FLORIDA · PI OPAVSKY, RENE · 2022 to 2025
$1.3M
NIGMS NIH HHS R01 GM145745NIH HHS 1R01GM145745-03A1
6 · The paper itself

Abstract

Cytosine methylation contributes to the regulation of gene expression and normal hematopoiesis in mammals. It is catalyzed by the family of DNA methyltransferases that include DNMT1, DNMT3A, and DNMT3B. Peripheral T-cell lymphomas (PTCLs) represent aggressive mature T-cell malignancies exhibiting a broad spectrum of clinical features with poor prognosis and inadequately understood molecular pathobiology. To better understand the molecular landscape and identify candidate genes involved in disease maintenance, we profiled DNA methylation and gene expression of PTCLs. We found that the methylation patterns in PTCLs are deregulated and heterogeneous but share 767 hypo- and 567 hypermethylated differentially methylated regions (DMRs) along with 231 genes up- and 91 genes downregulated in all samples, suggesting a potential association with tumor development. We further identified 39 hypomethylated promoters associated with increased gene expression in the majority of PTCLs. This putative oncogenic signature included the

Indexed as

cancer biologyDNA methylationDNA methyltransferasegene expressionlymphoma

Identifiers

PMID39189258
PMCPMC11348144

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.