Evidence map›Paper›PMID 39187619›Full record

ArticleCommunications biology2024

Structural shifts in TolC facilitate Efflux-Mediated β-lactam resistance.

Isik Kantarcioglu, Ilona K Gaszek, Tandac F Guclu, M Sadik Yildiz, Ali Rana Atilgan, Erdal Toprak, Canan Atilgan

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
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  4. Review
  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Isik KantarciogluFaculty of Engineering and Natural Sciences, Sabancı University, Tuzla, Istanbul, Turkey.ORCID 0000-0003-4486-7506
Ilona K GaszekDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0002-3397-7294
Tandac F GucluFaculty of Engineering and Natural Sciences, Sabancı University, Tuzla, Istanbul, Turkey.ORCID 0000-0002-2516-1922
M Sadik YildizDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Ali Rana AtilganFaculty of Engineering and Natural Sciences, Sabancı University, Tuzla, Istanbul, Turkey.ORCID 0000-0003-0604-6301
Erdal Toprak *Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA. erdal.toprak@utsouthwestern.edu.ORCID 0000-0002-4883-7681
Canan Atilgan *Faculty of Engineering and Natural Sciences, Sabancı University, Tuzla, Istanbul, Turkey. canan@sabanciuniv.edu.ORCID 0000-0003-0557-6044

Funding

Mapping epistatic interactions in molecular evolution of antibiotic resistanceR01GM125748 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Erdal Toprak · 2018 to 2026
$3.6M
Human Frontier Science Program (HFSP) RGP0042/2013NIGMS NIH HHS R01 GM125748Türkiye Bilimsel ve Teknolojik Araştirma Kurumu (Scientific and Technological Research Council of Turkey) 1059B142100453Türkiye Bilimsel ve Teknolojik Araştirma Kurumu (Scientific and Technological Research Council of Turkey) 122F149U.S. Department of Defense (United States Department of Defense) PR172118U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM125748Welch Foundation I-2082-20210327
6 · The paper itself

Abstract

Efflux-mediated β-lactam resistance is a major public health concern, reducing the effectiveness of β-lactam antibiotics against many bacteria. Structural analyses show the efflux protein TolC in Gram-negative bacteria acts as a channel for antibiotics, impacting bacterial susceptibility and virulence. This study examines β-lactam drug efflux mediated by TolC using experimental and computational methods. Molecular dynamics simulations of drug-free TolC reveal essential movements and key residues involved in TolC opening. A whole-gene-saturation mutagenesis assay, mutating each TolC residue and measuring fitness effects under β-lactam selection, is performed. Here we show the TolC-mediated efflux of three antibiotics: oxacillin, piperacillin, and carbenicillin. Steered molecular dynamics simulations identify general and drug-specific efflux mechanisms, revealing key positions at TolC's periplasmic entry affecting efflux motions. Our findings provide insights into TolC's structural dynamics, aiding the design of new antibiotics to overcome bacterial efflux mechanisms.

Indexed as

Anti-Bacterial AgentsBacterial Outer Membrane Proteinsbeta-Lactam ResistanceMolecular Dynamics SimulationEscherichia coliEscherichia coli ProteinsMembrane Transport ProteinsMicrobial Sensitivity TestsProtein ConformationAnti-Bacterial AgentsBacterial Outer Membrane ProteinsEscherichia coli ProteinsMembrane Transport ProteinstolC protein, E coli

Identifiers

PMID39187619
PMCPMC11347637

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.