Evidence map›Paper›PMID 39187540›Full record

ArticleScientific reports2024

Epidemiology and antibiotic resistance of staphylococci on commercial pig farms in Cape Town, South Africa.

Remous Ocloo, Mae Newton-Foot, Lucious Chabuka, Wilma Ziebuhr, Andrew Christopher Whitelaw

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Population structure, resistome, and virulome ofFrontiers in cellular and infection microbiology · 2025
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Remous OclooDepartment of Pathology, Division of Medical Microbiology, Stellenbosch University, Stellenbosch, South Africa. remous@sun.ac.za.
Mae Newton-FootDepartment of Pathology, Division of Medical Microbiology, Stellenbosch University, Stellenbosch, South Africa.
Lucious ChabukaCentre for Epidemic Control and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.
Wilma ZiebuhrInstitute of Molecular Infection Biology, Würzburg University, Würzburg, Germany.
Andrew Christopher WhitelawDepartment of Pathology, Division of Medical Microbiology, Stellenbosch University, Stellenbosch, South Africa.

Funding

German Federal Ministry of Education and Research (BMBF) 01KI2009EGerman Research Council (DFG) ZI665/3-1
6 · The paper itself

Abstract

Staphylococci are responsible for a wide range of infections in animals. The most common species infecting animals include Staphylococcus aureus, Staphylococcus epidermidis and Staphylococcus intermedius. Recent increases in antibiotic use and antibiotic resistance in animals highlight the need to understand the potential role of commercial livestock as a reservoir of staphylococci and antibiotic resistance genes. Nasal swabs were collected from 143 apparently healthy pigs and 21 pig farm workers, and 45 environmental swabs of feed and water troughs, from two commercial pig farms in the Western Cape, South Africa. Staphylococci were isolated, identified using mass-spectrometry, and antimicrobial susceptibility testing and Illumina whole genome sequencing were performed. One hundred and eighty-five (185) Staphylococcus spp. isolates were obtained, with Mammalicoccus sciuri (n = 57; 31%) being the most common, followed by S. hyicus (n = 40; 22%) and S. aureus (n = 29; 16%). S. epidermidis was predominantly identified in the farm workers (n = 18; 86%). Tetracycline resistance was observed across all species, with rates ranging from 67 to 100%. Majority of M. sciuri isolates (n = 40; 70%) were methicillin resistant, with 78% (n = 31) harbouring mecA. M. sciuri isolates had genes/elements which were associated with SCCmec_type_III (3A) and SCCmec_type_VIII(4A) and were mostly observed in ST61 strains. ST239 strains were associated with SCCmec_type_III(3A). High rates of tetracycline resistance were identified among staphylococci in the pig farms in Western Cape, South Africa. This highlights the need for policy makers to regulate the use of this antibiotic in pig farming.

Indexed as

Anti-Bacterial AgentsFarmsStaphylococcal InfectionsStaphylococcusAnimalsDrug Resistance, BacterialHumansMicrobial Sensitivity TestsSouth AfricaSwineSwine DiseasesAnti-Bacterial Agents

Identifiers

PMID39187540
PMCPMC11347665

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.