Evidence map›Paper›PMID 39187379›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2024

Dense and Persistent Odor Representations in the Olfactory Bulb of Awake Mice.

Delaram Pirhayati, Cameron L Smith, Ryan Kroeger, Saket Navlakha, Paul Pfaffinger, Jacob Reimer, Benjamin R Arenkiel, Ankit Patel, Elizabeth H Moss

Abstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Delaram PirhayatiDepartment of Electrical and Computer Engineering, Rice University, Houston, Texas 97030.
Cameron L SmithDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas 97030.
Ryan KroegerDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas 97030.
Saket NavlakhaCold Spring Harbor Laboratory, Cold Spring Harbor, Laurel Hollow, New York 11724.
Paul PfaffingerDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas 97030.
Jacob ReimerDepartment of Neuroscience, Baylor College of Medicine, Houston, Texas 97030.
Benjamin R ArenkielDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 97030.ORCID 0000-0001-9047-2420
Ankit PatelDepartment of Electrical and Computer Engineering, Rice University, Houston, Texas 97030 mosse@ohsu.edu ankit.patel@rice.edu.
Elizabeth H MossDepartment of Anesthesiology and Perioperative Medicine, Oregon Health & Science University, Portland, Oregon 97239 mosse@ohsu.edu ankit.patel@rice.edu.ORCID 0000-0002-5150-8926

Funding

Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
Multilevel Analysis of Neuronal Computations Underlying the Robust Encoding of Sensory Information in the Mammalian Olfactory SystemUF1NS111692 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI ARENKIEL, BENJAMIN R, PFAFFINGER, PAUL · 2019 to 2019
$4.5M
MAPPING CONNECTIVITY ONTO POSTNATAL-BORN NEURONSR01NS078294 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI ARENKIEL, BENJAMIN R · 2012 to 2023
$3.6M
Mechanisms of basal forebrain control over sensory processingR00DC019505 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI MOSS, ELIZABETH HANSON · 2023 to 2025
$722k
NIDCD NIH HHS R00 DC019505NINDS NIH HHS R01 NS078294NINDS NIH HHS UF1 NS111692
6 · The paper itself

Abstract

Recording and analysis of neural activity are often biased toward detecting sparse subsets of highly active neurons, masking important signals carried in low-magnitude and variable responses. To investigate the contribution of seemingly noisy activity to odor encoding, we used mesoscale calcium imaging from mice of both sexes to record odor responses from the dorsal surface of bilateral olfactory bulbs (OBs). The outer layer of the mouse OB is comprised of dendrites organized into discrete "glomeruli," which are defined by odor receptor-specific sensory neuron input. We extracted activity from a large population of glomeruli and used logistic regression to classify odors from individual trials with high accuracy. We then used add-in and dropout analyses to determine subsets of glomeruli necessary and sufficient for odor classification. Classifiers successfully predicted odor identity even after excluding sparse, highly active glomeruli, indicating that odor information is redundantly represented across a large population of glomeruli. Additionally, we found that random forest (RF) feature selection informed by Gini inequality (RF Gini impurity, RFGI) reliably ranked glomeruli by their contribution to overall odor classification. RFGI provided a measure of "feature importance" for each glomerulus that correlated with intuitive features like response magnitude. Finally, in agreement with previous work, we found that odor information persists in glomerular activity after the odor offset. Together, our findings support a model of OB odor coding where sparse activity is sufficient for odor identification, but information is widely, redundantly available across a large population of glomeruli, with each glomerulus representing information about more than one odor.

Indexed as

Mice, Inbred C57BLOdorantsOlfactory BulbWakefulnessAnimalsFemaleMaleMiceOlfactory Receptor NeuronsSmelllinear classifiersmesoscale calcium imagingodor informationolfactory bulbrandom forest feature importanceredundancy

Identifiers

PMID39187379
PMCPMC11426377

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.