Evidence map›Paper›PMID 39187372›Full record

ArticleNucleic acids research2024

Revisiting the model for coactivator recruitment: Med15 can select its target sites independent of promoter-bound transcription factors.

Vladimir Mindel, Sagie Brodsky, Hadas Yung, Wajd Manadre, Naama Barkai

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vladimir MindelDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.
Sagie BrodskyDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.
Hadas YungDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.
Wajd ManadreDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.
Naama BarkaiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 76100, Israel.ORCID 0000-0002-2444-6061

Funding

Europian ERCIsrael Science FoundationMinerva Center
6 · The paper itself

Abstract

Activation domains (ADs) within transcription factors (TFs) induce gene expression by recruiting coactivators such as the Mediator complex. Coactivators lack DNA binding domains (DBDs) and are assumed to passively follow their recruiting TFs. This is supported by direct AD-coactivator interactions seen in vitro but has not yet been tested in living cells. To examine that, we targeted two Med15-recruiting ADs to a range of budding yeast promoters through fusion with different DBDs. The DBD-AD fusions localized to hundreds of genomic sites but recruited Med15 and induced transcription in only a subset of bound promoters, characterized by a fuzzy-nucleosome architecture. Direct DBD-Med15 fusions shifted DBD localization towards fuzzy-nucleosome promoters, including promoters devoid of the endogenous Mediator. We propose that Med15, and perhaps other coactivators, possess inherent promoter preference and thus actively contribute to the selection of TF-induced genes.

Indexed as

Mediator ComplexPromoter Regions, GeneticSaccharomyces cerevisiae ProteinsTranscription FactorsBinding SitesGene Expression Regulation, FungalNucleosomesProtein DomainsSaccharomyces cerevisiaeTrans-ActivatorsTranscriptional ActivationMediator ComplexNucleosomesSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID39187372
PMCPMC11551773

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.