Evidence map›Paper›PMID 39186753›Full record

ArticlePloS one2024

The pattern of rpoB gene mutation of Mycobacterium tuberculosis and predictors of rifampicin resistance detected by GeneXpert MTB/RIF assay in Tanzania.

Peter Richard Torokaa, Mtebe V Majigo, Heledy Kileo, Loveness Urio, Mariam R Mbwana, Mariam C Monah, Sephord Saul Ntibabara, Jasper Kimambo, Paschal Seleman, Collins Franklin and 3 more

Abstract read
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Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Peter Richard TorokaaMuhimbili University of Health and Allied Sciences, School of Public Health and Social Sciences, Dar es Salaam, Tanzania.ORCID 0009-0003-3843-3434
Mtebe V MajigoMuhimbili University of Health and Allied Sciences, School of Diagnostic Medicine, Dar es Salaam, Tanzania.ORCID 0000-0003-3726-2816
Heledy KileoMuhimbili University of Health and Allied Sciences, School of Diagnostic Medicine, Dar es Salaam, Tanzania.
Loveness UrioTanzania Field Epidemiology and Laboratory Training Program, Dar es Salaam, Tanzania.
Mariam R MbwanaMuhimbili University of Health and Allied Sciences, School of Public Health and Social Sciences, Dar es Salaam, Tanzania.
Mariam C MonahMuhimbili University of Health and Allied Sciences, School of Public Health and Social Sciences, Dar es Salaam, Tanzania.
Sephord Saul NtibabaraMuhimbili University of Health and Allied Sciences, School of Public Health and Social Sciences, Dar es Salaam, Tanzania.
Jasper KimamboMuhimbili University of Health and Allied Sciences, School of Public Health and Social Sciences, Dar es Salaam, Tanzania.
Paschal SelemanMinistry of Health, National TB and Leprosy Programme, Dodoma, Tanzania.
Collins FranklinMinistry of Health, National TB and Leprosy Programme, Dodoma, Tanzania.
Robert BalamaMinistry of Health, National TB and Leprosy Programme, Dodoma, Tanzania.
Riziki M KisongaMinistry of Health, National TB and Leprosy Programme, Dodoma, Tanzania.
Agricola JoachimMuhimbili University of Health and Allied Sciences, School of Diagnostic Medicine, Dar es Salaam, Tanzania.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionAntimicrobial resistance in Mycobacterium tuberculosis (MTB) poses a significant challenge to tuberculosis (TB) management worldwide. Rifampicin resistance (RR) has been associated with the rpoB gene mutation. No study was conducted in Tanzania to determine the commonest mutation. The inconsistent findings from various studies support the need to determine whether reported mutation patterns are applicable in our setting. We determined the frequency of rpoB gene mutation and factors associated with RR, which were detected using GeneXpert MTB/RIF assay.

methodsWe conducted a retrospective cross-sectional study involving data from the National Tuberculosis and Leprosy Program database from 2020 to 2022 for cases investigated using GeneXpert MTB/RIF assay. Descriptive analysis was performed to determine the frequency of categorical variables. The chi-square test and logistic regression analysis assessed the relationship between the independent variables and outcome. The 95% confidence interval and a significance level of p<0.05 were used to assess the strength of association.

resultsA total of 56,004 participants had a status of MTB and RR, where 38,705/56,004 (69.11%) were males. Probe E mutation (codon 529-533), 89/219 (40.64%) was predominant. Human immunodeficiency virus (HIV)-positive patients had a higher gene mutation, 134/10601 (1.26%) than HIV-negative, 306/45016 (0.68%) (p<0.001). Patients with both pulmonary and extra-pulmonary TB had about four times greater odds of developing rifampicin resistance (AOR 3.88, 95%CI: 1.80-8.32). RR was nearly nine times higher in previously treated patients than new patients (AOR 8.66, 95% CI: 6.97-10.76). HIV-positive individuals had nearly twice the odds of developing RR than HIV-negative individuals (AOR 1.91, 95%CI: 1.51-2.42).

conclusionThe rate of RR was lower compared to other studies in Tanzania, with probe E mutations the most prevalent. Patients with disseminated TB, HIV co-infection and those with prior exposure to anti-TB had more risk of RR. The findings highlight the need to strengthen surveillance of multidrug-resistant TB among high risk patients.

Indexed as

Bacterial ProteinsDNA-Directed RNA PolymerasesDrug Resistance, BacterialMutationMycobacterium tuberculosisRifampinAdolescentAdultAntibiotics, AntitubercularChildCross-Sectional StudiesFemaleHumansMaleMicrobial Sensitivity TestsMiddle AgedAntibiotics, AntitubercularBacterial ProteinsDNA-Directed RNA PolymerasesRifampinrpoB protein, Mycobacterium tuberculosis

Identifiers

PMID39186753
PMCPMC11346956

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.