Evidence map›Paper›PMID 39185716›Full record

ArticleBiochemistry2024

HDX-MS Analysis of Catalytic Activation of IKK2 in the IκB Kinase Complex.

William Suryajaya, Tapan Biswas, Shandy Shahabi, Matthew Mealka, Tom Huxford, Gourisankar Ghosh

Abstract read
In one paragraph

Article in Biochemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

William SuryajayaDepartment of Chemistry & Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0357, United States.
Tapan BiswasDepartment of Chemistry & Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0357, United States.
Shandy ShahabiDepartment of Chemistry & Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0357, United States.
Matthew MealkaStructural Biochemistry Laboratory Department of Chemistry & Biochemistry, San Diego State University, 5500 Campanile Drive, San Diego, California 92182-1030, United States.
Tom HuxfordStructural Biochemistry Laboratory Department of Chemistry & Biochemistry, San Diego State University, 5500 Campanile Drive, San Diego, California 92182-1030, United States.ORCID 0000-0002-1939-7373
Gourisankar GhoshDepartment of Chemistry & Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0357, United States.ORCID 0000-0001-6311-7351

Funding

Suppressing Inflammation by Blocking IKK OligomerR01AI163327 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOURISANKAR GHOSH · 2022 to 2026
$2.6M
NIAID NIH HHS R01 AI163327
6 · The paper itself

Abstract

The IκB Kinase (IKK) complex, containing catalytic IKK2 and noncatalytic NEMO subunits, plays essential roles in the induction of transcription factors of the NF-κB family. Catalytic activation of IKK2 via phosphorylation of its activation loop is promoted upon noncovalent association of linear or K63-linked polyubiquitin chains to NEMO within the IKK complex. The mechanisms of this activation remain speculative. To investigate interaction dynamics within the IKK complex during activation of IKK2, we conducted hydrogen-deuterium exchange coupled with mass spectrometry (HDX-MS) on NEMO and IKK2 proteins in their free and complex-bound states. Altered proton exchange profiles were observed in both IKK2 and NEMO upon complex formation, and changes were consistent with the involvement of distinct regions throughout the entire length of both proteins, including previously uncharacterized segments, in direct or allosteric interactions. Association with linear tetraubiquitin (Ub

Indexed as

I-kappa B KinaseEnzyme ActivationHumansHydrogen Deuterium Exchange-Mass SpectrometryModels, MolecularPhosphorylationProtein BindingUbiquitinI-kappa B KinaseIKBKB protein, humanIKBKG protein, humanUbiquitin

Identifiers

PMID39185716
PMCPMC11731525

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.