Evidence map›Paper›PMID 39185213›Full record

ArticlebioRxiv : the preprint server for biology2024

Nernst Equilibrium, Rectification, and Saturation: Insights into Ion Channel Behavior.

Ryan Carlsen, Hannah Weckel-Dahman, Jessica M J Swanson

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Ryan CarlsenDepartment of Chemistry, University of Utah, Salt Lake City, UT, 84112 - United States of America.ORCID 0009-0005-6213-1182
Hannah Weckel-DahmanDepartment of Chemistry, University of Utah, Salt Lake City, UT, 84112 - United States of America.ORCID 0000-0003-2834-8386
Jessica M J SwansonDepartment of Chemistry, University of Utah, Salt Lake City, UT, 84112 - United States of America.ORCID 0000-0002-9820-1307

Funding

Integrating Stochasticity into Biomolecular Mechanisms: A New Direction for Biomolecular ModelingR35GM143117 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI SWANSON, JESSICA · 2021 to 2025
$1.9M
NIGMS NIH HHS R35 GM143117
6 · The paper itself

Abstract

The dissipation of electrochemical gradients through ion channels plays a central role in biology. Herein we use voltage responsive kinetic models of ion channels to explore how electrical and chemical potentials differentially influence ion transport properties. These models demonstrate how electrically driven flux is greater than the Nernstian equivalent chemically driven flux, yet still perfectly cancels when the two gradients oppose each other. We find that the location and relative stability of ion binding sites dictates rectification properties by shifting the location of the most voltage sensitive transitions. However, these rectification properties invert when bulk concentrations increase relative to the binding site stabilities, moving the rate limiting steps from uptake into a relatively empty channel to release from an ion-blocked full channel. Additionally, the origin of channel saturation is shown to depend on the free energy of uptake relative to bulk concentrations. Collectively these insights provide framework for interpreting and predicting how channel properties manifest in electrochemical transport behavior.

Identifiers

PMID39185213
PMCPMC11343188

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.