Evidence map›Paper›PMID 39185146›Full record

ArticlebioRxiv : the preprint server for biology2024

Transcriptional analysis of efferocytosis in mouse skin wounds.

Will Krause, Diane King, Valerie Horsley

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Will KrauseDept. of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, USA.ORCID 0000-0001-7585-5749
Diane KingSunnyCrest Bioinformatics, Flemington, New Jersey, USA.ORCID 0009-0000-3228-9484
Valerie HorsleyDept. of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, USA.ORCID 0000-0002-1254-5839

Funding

Mechanism and Impact of Dermal adipocyte remodeling in skin fibrosisR01AR076938 · NIAMS · YALE UNIVERSITY · PI ATIT, RADHIKA P, HORSLEY, VALERIE · 2020 to 2024
$2.4M
Adipocyte lipolysis regulates skin repairR01AR075412 · NIAMS · YALE UNIVERSITY · PI HORSLEY, VALERIE · 2019 to 2023
$2.3M
Pacific Bioscience Sequel II sequencing system for the Yale Center for Genome Analysis (YCGA)S10OD028669 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2020 to 2020
$407k
NIAMS NIH HHS R01 AR075412NIAMS NIH HHS R01 AR076938NIH HHS S10 OD028669
6 · The paper itself

Abstract

Defects in apoptotic cell clearance, or efferocytosis, can cause inflammatory diseases and prevent tissue repair due in part to inducing a pro-repair transcriptional program in phagocytic cells like macrophages. While the cellular machinery and metabolic pathways involved in efferocytosis have been characterized, the precise efferocytic response of macrophages is dependent on the identity and macromolecular cues of apoptotic cells, and the complex tissue microenvironment in which efferocytosis occurs. Here, we find that macrophages undergoing active efferocytosis in mid-stage mouse skin wounds in vivo display a pro-repair gene program, while efferocytosis of apoptotic skin fibroblasts in vitro also induces an inflammatory transcription response. These data provide a resource for understanding how the skin wound environment influences macrophage efferocytosis and will be useful for future investigations that define the role of efferocytosis during tissue repair.

Identifiers

PMID39185146
PMCPMC11343138

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.