Evidence map›Paper›PMID 39183237›Full record

ArticleNature communications2024

Structural basis for allosteric regulation of human phosphofructokinase-1.

Eric M Lynch, Heather Hansen, Lauren Salay, Madison Cooper, Stepan Timr, Justin M Kollman, Bradley A Webb

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Review
  2. Article
  3. Physiological Responses in the Hepatopancreas ofAntioxidants (Basel, Switzerland) · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Structural basis of secreted acid phosphatase polymerization in the Leishmania parasite.Protein science : a publication of the Protein Society · 2026
    Article
  12. Inorganic phosphate and the rapid mobilization of metabolic energy in neurons.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  13. Review
  14. Article
  15. Glycolysis enzymes and cellular lactylation in tumour.Clinical and translational medicine · 2026
    Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Eric M LynchDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-5897-5167
Heather HansenDepartment of Biochemistry and Molecular Medicine, West Virginia University, Morgantown, WV, USA.
Lauren SalayDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8513-1891
Madison CooperDepartment of Biochemistry and Molecular Medicine, West Virginia University, Morgantown, WV, USA.ORCID 0000-0002-1934-0916
Stepan TimrDepartment of Computational Chemistry, J. Heyrovsky Institute of Physical Chemistry, Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-5824-4476
Justin M KollmanDepartment of Biochemistry, University of Washington, Seattle, WA, USA. jkoll@uw.edu.ORCID 0000-0002-0350-5827
Bradley A WebbDepartment of Biochemistry and Molecular Medicine, West Virginia University, Morgantown, WV, USA. bradley.webb@hsc.wvu.edu.ORCID 0000-0002-5299-2852

Funding

VS-CoBRE Administrative CoreP20GM144230 · NIGMS · WEST VIRGINIA UNIVERSITY · PI Amanda Susanne Gatesman-Ammer · 2022 to 2026
$13.9M
Structure and function of metabolic enzyme assembliesR35GM149542 · NIGMS · UNIVERSITY OF WASHINGTON · PI Justin M Kollman · 2023 to 2026
$2.2M
Acquisition of a high resolution, high throughput cryo-electron microscopeS10OD023476 · OD · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2017 to 2017
$2.0M
Investigating the Structure and Regulation of PFKF32GM154453 · NIGMS · UNIVERSITY OF WASHINGTON · PI Lauren Salay · 2024 to 2026
$241k
CONTROL OF MICROTUBULE ASSEMBLY IN VITRO AND IN VIVOR01GM023476 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI LUDUENA, RICHARD F · 1987 to 1995
–
NIGMS NIH HHS F32 GM154453NIGMS NIH HHS P20 GM144230NIGMS NIH HHS R35 GM149542NIH HHS S10 OD023476U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1R35GM149542U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) P20GM144230U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) S10OD023476
6 · The paper itself

Abstract

Phosphofructokinase-1 (PFK1) catalyzes the rate-limiting step of glycolysis, committing glucose to conversion into cellular energy. PFK1 is highly regulated to respond to the changing energy needs of the cell. In bacteria, the structural basis of PFK1 regulation is a textbook example of allostery; molecular signals of low and high cellular energy promote transition between an active R-state and inactive T-state conformation, respectively. Little is known, however, about the structural basis for regulation of eukaryotic PFK1. Here, we determine structures of the human liver isoform of PFK1 (PFKL) in the R- and T-state by cryoEM, providing insight into eukaryotic PFK1 allosteric regulatory mechanisms. The T-state structure reveals conformational differences between the bacterial and eukaryotic enzyme, the mechanisms of allosteric inhibition by ATP binding at multiple sites, and an autoinhibitory role of the C-terminus in stabilizing the T-state. We also determine structures of PFKL filaments that define the mechanism of higher-order assembly and demonstrate that these structures are necessary for higher-order assembly of PFKL in cells.

Indexed as

Adenosine TriphosphatePhosphofructokinase-1Allosteric RegulationCryoelectron MicroscopyGlycolysisHumansLiverModels, MolecularPhosphofructokinasesProtein ConformationAdenosine TriphosphatePFKL protein, humanPfkl protein, mousePhosphofructokinase-1Phosphofructokinases

Identifiers

PMID39183237
PMCPMC11345425

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.