Evidence map›Paper›PMID 39182826›Full record

ArticleInternational journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases2024

Widespread hepatitis C virus transmission network among people who inject drugs in Kenya.

Matthew J Akiyama, Yury Khudyakov, Sumathi Ramachandran, Lindsey R Riback, Maxwell Ackerman, Mercy Nyakowa, Leonard Arthur, John Lizcano, Josephine Walker, Peter Cherutich and 1 more

Abstract read
In one paragraph

Article in International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Observational
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Matthew J AkiyamaDepartment of Medicine, Albert Einstein College of Medicine, Montefiore Medical Center, Bronx, United States. Electronic address: matthew.akiyama@einsteinmed.edu.
Yury KhudyakovDivision of Viral Hepatitis, Centers for Disease Control, Atlanta, United States.
Sumathi RamachandranDivision of Viral Hepatitis, Centers for Disease Control, Atlanta, United States.
Lindsey R RibackDepartment of Medicine, Albert Einstein College of Medicine, Montefiore Medical Center, Bronx, United States.
Maxwell AckermanDepartment of Medicine, Albert Einstein College of Medicine, Montefiore Medical Center, Bronx, United States.
Mercy NyakowaKenya Ministry of Health, National AIDS&STI Control Program (NASCOP), Nairobi, Kenya.
Leonard ArthurDivision of Viral Hepatitis, Centers for Disease Control, Atlanta, United States.
John LizcanoUniversity of Bristol, Bristol, United Kingdom.
Josephine WalkerYale University School of Nursing, Orange, United States.
Peter CherutichKenya Ministry of Health, National AIDS&STI Control Program (NASCOP), Nairobi, Kenya.
Ann KurthUniversity of Bristol, Bristol, United Kingdom.

Funding

Technical Assistance CoreU2CDA050097 · NIDA · GEORGE MASON UNIVERSITY · PI Todd David Molfenter, Jessica Hulsey Nickel · 2019 to 2026
$37.0M
Test and Linkage to Care (TLC_IDU) KenyaR01DA032080 · NIDA · YALE UNIVERSITY · PI CHERUTICH, PETER KIPKOECH, KURTH, ANN ELIZABETH · 2011 to 2015
$4.1M
Leveraging community health workers to improve SARS-CoV-2 testing and mitigation among criminal justice-involved individuals accessing a corrections-focused community-based organizationR01MD016744 · NIMHD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Matthew Akiyama · 2021 to 2026
$3.5M
Leveraging HCV Phylogenetic Networks to Prevent HIV and Other Blood Borne Infections Among People Who Inject DrugsDP2DA053730 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI AKIYAMA, MATTHEW · 2021 to 2021
$2.5M
A Decentralized, Status neutral, Stakeholder-engaged, post-incarceration intervention for people with and at risk for HIVR61DA060627 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI AKIYAMA, MATTHEW · 2024 to 2024
$963k
Advance Care Coordination and Enhanced Linkage and Retention Among Transitional Re-Entrants LivingR00DA043011 · NIDA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI AKIYAMA, MATTHEW · 2020 to 2022
$747k
NIDA NIH HHS DP2 DA053730NIDA NIH HHS R00 DA043011NIDA NIH HHS R01 DA032080NIDA NIH HHS R61 DA060627NIDA NIH HHS U2C DA050097NIMHD NIH HHS R01 MD016744
6 · The paper itself

Abstract

objectivesHepatitis C virus (HCV) disproportionately affects people who inject drugs (PWID) worldwide. Despite carrying a high HCV burden, little is known about transmission dynamics in low- and middle-income countries.

methodsWe recruited PWID from Nairobi and coastal cities and towns of Mombasa, Kilifi, and Malindi in Kenya at needle and syringe programs. Next-generation sequencing data from HCV hypervariable region 1 were analyzed using Global Hepatitis Outbreak and Surveillance Technology to identify transmission clusters.

resultsHCV strains belonged to genotype 1a (n = 64, 46.0%), 4a (n = 72, 51.8%) and mixed HCV/1a/4a (n = 3, 2.2%). HCV/1a was dominant (61.2%) in Nairobi, whereas HCV/4a was dominant in Malindi (85.7%) and Kilifi (60.9%), and both genotypes were evenly identified in Mombasa (45.3% for HCV/1a and 50.9% for HCV/4a). Global Hepatitis Outbreak and Surveillance Technology identified 11 transmission clusters involving 90 cases. Strains in the two largest clusters (n = 38 predominantly HCV/4a and n = 32 HCV/1a) were sampled from all four sites.

conclusionsTransmission clusters involving 64.7% of cases indicate an effective sampling of major HCV strains circulating among PWID. Large clusters involving 77.8% of clustered strains from Nairobi and Coast suggest successful introduction of two ancestral HCV/1a and HCV/4a strains to PWID and the existence of a widespread transmission network in the country. The disruption of this network is essential for HCV elimination.

Indexed as

GenotypeHepacivirusHepatitis CSubstance Abuse, IntravenousAdultDisease OutbreaksFemaleHigh-Throughput Nucleotide SequencingHumansKenyaMaleMiddle AgedPhylogenyYoung AdultGHOSTHepatitis CKenyaNext-generation sequencing (NGS)People who inject drugs (PWID)Transmission network

Identifiers

PMID39182826
PMCPMC11531246

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.