Evidence map›Paper›PMID 39181428›Full record

ArticleClinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association2025

Ancestral Diversity in Pharmacogenomics Affects Treatment for Hispanic/Latine Populations With Inflammatory Bowel Disease.

Stephanie Ioannou, Ashley Beecham, Lissette Gomez, Ryan Dauer, Nidah Khakoo, Lauren Pascual, Maria Quintero, Joanna Lopez, James S Leavitt, Norma Solis and 11 more

Abstract readMulticenter Study
In one paragraph

Article in Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  4. Distribution ofFrontiers in pharmacology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Stephanie IoannouDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Ashley BeechamJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida.
Lissette GomezJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida.
Ryan DauerDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Nidah KhakooDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Lauren PascualDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Maria QuinteroDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Joanna LopezDepartment of Gastroenterology, Gastro Health, Miami, Florida.
James S LeavittDepartment of Gastroenterology, Gastro Health, Miami, Florida.
Norma SolisDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Mailenys OrtegaDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Amar R DeshpandeDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
David H KermanDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Siobhan ProksellDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Esther A TorresDepartment of Gastroenterology, University of Puerto Rico School of Medicine, San Juan, Puerto Rico.
Talin HarituniansF. Widjaja Foundation Inflammatory Bowel Disease Institute, Cedars-Sinai Medical Center, Los Angeles, California.
Dalin LiF. Widjaja Foundation Inflammatory Bowel Disease Institute, Cedars-Sinai Medical Center, Los Angeles, California.
Maria T AbreuDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida.
Dermott P B McGovernF. Widjaja Foundation Inflammatory Bowel Disease Institute, Cedars-Sinai Medical Center, Los Angeles, California.
Jacob L McCauleyJohn P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida.
Oriana M DamasDivision of Digestive Health and Liver Diseases, University of Miami Miller School of Medicine, Miami, Florida. Electronic address: omazorra@med.miami.edu.

Funding

Utilizing the Phenomics of IBD to Enhance Gene DiscoveryU01DK062413 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI Dermot Patrick McGovern · 2002 to 2026
$12.2M
University of Miami IBD Genetic Research Center: Understanding the Genetic Architecture of IBD in the South Florida communityU01DK134201 · NIDDK · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Maria Teresa Abreu, Jacob L McCauley · 2022 to 2026
$3.0M
The impact of diet patterns and PUFA-related polymorphisms on ulcerative colitis in HispanicsK23DK117054 · NIDDK · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI DAMAS, ORIANA MAZORRA · 2019 to 2023
$1.0M
NIDDK NIH HHS K23 DK117054NIDDK NIH HHS U01 DK062413NIDDK NIH HHS U01 DK134201
6 · The paper itself

Abstract

BACKGROUND AND

aimsThe prevalence of inflammatory bowel disease among Hispanic/Latine communities is increasing. Pharmacogenomic studies reveal genetic markers that influence treatment decisions. The aim of our study was to examine the frequency and impact of genetic polymorphisms on thiopurine-associated leukopenia (NUDT15, TPMT) and anti-tumor necrosis factor (TNF) immunogenicity (HLA-DQA1∗05) in a cohort of Hispanic patients of diverse ancestral backgrounds.

methodsWe performed a multicenter, retrospective cohort study comprising 2225 Hispanic participants. We measured the frequency of variation affecting drug response in NUDT15, TPMT, and HLA-DQA1∗05; their ancestral origin (European, African, or Amerindian); and the rate of development of myelosuppression and immunogenicity to thiopurines and anti-TNFs, in exposed patients.

resultsNUDT15 and TPMT variants were rare, except for rs116855232 in NUDT15, which was common only in alleles of Amerindian origin. All NUDT15 variant alleles were inherited on an Amerindian haplotype, and among the Amerindian allele subset, the variant frequency of NUDT15∗4 (rs147390019) was a remarkable 23% in patients with leukopenia but only 3% in patients without leukopenia. HLA-DQA1∗05 and its European tagging variant rs2097432 were common in alleles from all ancestral origins and demonstrated association with immunogenicity to anti-TNFs. However, rs2097432 was only correlated with HLA-DQA1∗05 in the European allele subset.

conclusionsThese findings indicate that NUDT15 testing should become standard clinical practice before prescribing thiopurines in individuals with Amerindian/Alaska Native ancestry, including Hispanic individuals. Additionally, rs2097432 should not be used as a surrogate for HLA-DQA1∗05 testing for diverse populations. Ultimately, incorporating ancestry in personalized therapeutic approaches is important for treatment of Hispanic patients with inflammatory bowel disease.

Indexed as

Hispanic or LatinoInflammatory Bowel DiseasesLeukopeniaPyrophosphatasesAdultAgedAlaska NativesFemaleHLA-DQ alpha-ChainsHumansIndians, South AmericanMaleMethyltransferasesMiddle AgedNudix HydrolasesPharmacogeneticsHLA-DQA1 antigenHLA-DQ alpha-ChainsMethyltransferasesNudix HydrolasesNUDT15 protein, humanPyrophosphatasesTPMT protein, humanCrohn’s DiseaseHispanic/LatineInflammatory Bowel DiseasePharmacogenomicsUlcerative Colitis

Identifiers

PMID39181428
PMCPMC11846958

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.