Evidence map›Paper›PMID 39180448›Full record

ArticleSmall (Weinheim an der Bergstrasse, Germany)2024

Robust Sequence Design Space for the Isothermal Exponential Amplification of Short Oligonucleotides.

Yan Shan Ang, Lin-Yue Lanry Yung

Abstract read
In one paragraph

Article in Small (Weinheim an der Bergstrasse, Germany), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yan Shan AngDepartment of Chemical & Biomolecular Engineering, National University of Singapore, Singapore, 117585, Singapore.
Lin-Yue Lanry YungDepartment of Chemical & Biomolecular Engineering, National University of Singapore, Singapore, 117585, Singapore.ORCID 0000-0001-7579-6347

Funding

Singapore Ministry of Education Academic Research Fund Tier 1 A-0009534-01-00Singapore Ministry of Education Academic Research Fund Tier 2 MOE-T2EP50120-0018
6 · The paper itself

Abstract

Advances in isothermal amplification techniques have accelerated development in biosensing applications and the design of complex molecular devices. The exponential amplification reaction technique, or EXPAR, is uniquely positioned to process molecular information from short oligonucleotide strands (≈10 nucleotides length) typically encountered in molecular computing or microRNA detection. Despite its conceptual simplicity (requiring only a template strand and two enzymes), the issue of nonspecific background amplification has hindered broader adoption. In this work, a new system configuration is established at 37 °C to achieve significantly improved performance. Critical sequence motifs responsible for the excellent signal-to-background profile are identified and generalized as a universal adapter design framework. Orthogonal template sequences generated from the framework are implemented for a triplex reaction and successfully evaluated mixtures of multiple-target inputs in a single-step, one-pot format without the need for exogenous agents.

Indexed as

Nucleic Acid Amplification TechniquesOligonucleotidesBase SequenceBiosensing TechniquesOligonucleotidesenzymesisothermal amplificationmolecular evolutionnucleic acidsoligonucleotides

Identifiers

PMID39180448
PMCPMC11579956

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.