Evidence map›Paper›PMID 39179986›Full record

ArticleBMC plant biology2024

Genome-wide identification and analysis of abiotic stress responsiveness of the mitogen-activated protein kinase gene family in Medicago sativa L.

Hao Liu, Xianyang Li, Fei He, Mingna Li, Yunfei Zi, Ruicai Long, Guoqing Zhao, Lihua Zhu, Ling Hong, Shiqing Wang and 3 more

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. Plants (Basel, Switzerland) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Hao Liu *Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Xianyang Li *Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Fei He *Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Mingna LiInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Yunfei ZiInstitute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China.
Ruicai LongInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Guoqing ZhaoInstitute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China.
Lihua ZhuInstitute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China.
Ling HongInstitute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China.
Shiqing WangInstitute of Forage Crop Science, Ordos Academy of Agricultural and Animal Husbandry Sciences, Ordos, 017000, China.
Junmei KangInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Qingchuan YangInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Lin ChenInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. chenlin@caas.cn.

Funding

National Natural Science Foundation of China 32371757
6 · The paper itself

Abstract

backgroundThe mitogen-activated protein kinase (MAPK) cascade is crucial cell signal transduction mechanism that plays an important role in plant growth and development, metabolism, and stress responses. The MAPK cascade includes three protein kinases, MAPK, MAPKK, and MAPKKK. The three protein kinases mediate signaling to downstream response molecules by sequential phosphorylation. The MAPK gene family has been identified and analyzed in many plants, however it has not been investigated in alfalfa.

resultsIn this study, Medicago sativa MAPK genes (referred to as MsMAPKs) were identified in the tetraploid alfalfa genome. Eighty MsMAPKs were divided into four groups, with eight in group A, 21 in group B, 21 in group C and 30 in group D. Analysis of the basic structures of the MsMAPKs revealed presence of a conserved TXY motif. Groups A, B and C contained a TEY motif, while group D contained a TDY motif. RNA-seq analysis revealed tissue-specificity of two MsMAPKs and tissue-wide expression of 35 MsMAPKs. Further analysis identified MsMAPK members responsive to drought, salt, and cold stress conditions. Two MsMAPKs (MsMAPK70 and MsMAPK75) responds to salt and cold stresses; two MsMAPKs (MsMAPK60 and MsMAPK73) responds to cold and drought stresses; four MsMAPKs (MsMAPK1, MsMAPK33, MsMAPK64 and MsMAPK71) responds to salt and drought stresses; and two MsMAPKs (MsMAPK5 and MsMAPK7) responded to all three stresses.

conclusionThis study comprehensively identified and analysed the alfalfa MAPK gene family. Candidate genes related to abiotic stresses were screened by analysing the RNA-seq data. The results provide key information for further analysis of alfalfa MAPK gene functions and improvement of stress tolerance.

Indexed as

Medicago sativaMitogen-Activated Protein KinasesStress, PhysiologicalDroughtsGene Expression Regulation, PlantGenome, PlantMultigene FamilyPhylogenyPlant ProteinsMitogen-Activated Protein KinasesPlant ProteinsAbiotic stress responseGenome-wide analysisMedicago sativa L.MsMAPK gene familyTissue-specific expression

Identifiers

PMID39179986
PMCPMC11344418

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.