Evidence map›Paper›PMID 39179703›Full record

ArticleScientific reports2024

Global microRNA profiling of bone marrow-MSC derived extracellular vesicles identifies miRNAs associated with hematopoietic dysfunction in aplastic anemia.

Jyotika Srivastava, Kavita Kundal, Bhuvnesh Rai, Pragati Saxena, Shobhita Katiyar, Naresh Tripathy, Sanjeev Yadav, Ruchi Gupta, Rahul Kumar, Soniya Nityanand and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jyotika Srivastava *Department of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India.
Kavita Kundal *Computational Genomics and Transcriptomics Lab, Department of Biotechnology, Indian Institute of Technology Hyderabad, Sangareddy, Kandi, Hyderabad, 502285, Telangana, India.
Bhuvnesh Rai *Department of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India.
Pragati SaxenaDepartment of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India.
Shobhita KatiyarDepartment of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India.
Naresh TripathyDepartment of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India.
Sanjeev YadavDepartment of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India.
Ruchi GuptaDepartment of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India.
Rahul KumarComputational Genomics and Transcriptomics Lab, Department of Biotechnology, Indian Institute of Technology Hyderabad, Sangareddy, Kandi, Hyderabad, 502285, Telangana, India.
Soniya NityanandDepartment of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India. soniya_nityanand@yahoo.co.in.
Chandra Prakash ChaturvediDepartment of Hematology, Stem Cell Research Center, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Rae Barely Road, Lucknow, 226014, Uttar Pradesh, India. chaturvedicp75@rediffmail.com.

Funding

Department of Biotechnology, Ministry of Science and Technology, India BT/PR31421/MED/31/407/2019DST-INSPIRE Ph.D. Fellowship IF170881Indian Council of Medical Research SRF: 2020-7639/SCR-BMSWellcome Trust DBT India Alliance Grant IA/I/16/1/502374
6 · The paper itself

Abstract

Recently, we have reported that extracellular vesicles (EVs) from the bone marrow mesenchymal stromal cells (BM-MSC) of aplastic anemia (AA) patients inhibit hematopoietic stem and progenitor cell (HSPC) proliferative and colony-forming ability and promote apoptosis. One mechanism by which AA BM-MSC EVs might contribute to these altered HSPC functions is through microRNAs (miRNAs) encapsulated in EVs. However, little is known about the role of BM-MSC EVs derived miRNAs in regulating HSPC functions in AA. Therefore, we performed miRNA profiling of EVs from BM-MSC of AA (n = 6) and normal controls (NC) (n = 6) to identify differentially expressed miRNAs. The Integrated DEseq2 analysis revealed 34 significantly altered mature miRNAs, targeting 235 differentially expressed HSPC genes in AA. Hub gene analysis revealed 10 HSPC genes such as IGF-1R, IGF2R, PAK1, PTPN1, etc., which are targeted by EV miRNAs and had an enrichment of chemokine, MAPK, NK cell-mediated cytotoxicity, Rap1, PI3k-Akt, mTOR signalling pathways which are associated with hematopoietic homeostasis. We further showed that miR-139-5p and its target, IGF-1R (hub-gene), might regulate HSPC proliferation and apoptosis, which may serve as potential therapeutic targets in AA. Overall, the study highlights that AA BM-MSC EV miRNAs could contribute to impaired HSPC functions in AA.

Indexed as

Anemia, AplasticExtracellular VesiclesGene Expression ProfilingMesenchymal Stem CellsMicroRNAsAdultApoptosisBone Marrow CellsFemaleHematopoiesisHematopoietic Stem CellsHumansMaleMiddle AgedSignal TransductionMicroRNAsExtracellular vesiclesHematopoietic stem progenitor cellsHub-genesMesenchymal stromal cellsMiRNA profiling

Identifiers

PMID39179703
PMCPMC11343855

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.