Evidence map›Paper›PMID 39179672›Full record

ArticleNature chemical biology2025

Structural basis for intermodular communication in assembly-line polyketide biosynthesis.

Dillon P Cogan, Alexander M Soohoo, Muyuan Chen, Yan Liu, Krystal L Brodsky, Chaitan Khosla

Abstract read
In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Repurposing FDA-Approved Drugs to Inhibit Fungal PPTases for Broad-Spectrum Synergy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dillon P CoganDepartment of Chemistry, Stanford University, Stanford, CA, USA. dcogan@usc.edu.ORCID http://orcid.org/0000-0003-4563-2397
Alexander M Soohoo *Department of Chemical Engineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0009-0006-8468-5212
Muyuan Chen *Division of CryoEM and Bioimaging, Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA, USA.
Yan LiuDivision of CryoEM and Bioimaging, Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0001-5683-8695
Krystal L BrodskyDepartment of Chemistry, Stanford University, Stanford, CA, USA.
Chaitan KhoslaDepartment of Chemistry, Stanford University, Stanford, CA, USA. khosla@stanford.edu.ORCID http://orcid.org/0000-0001-6529-495X

Funding

The Stanford-SLAC CryoEM Center supplementU24GM129541 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH, HEDMAN, BRITT · 2018 to 2023
$54.8M
Mechanisms and Evolution of Assembly-Line Polyketide SynthasesR35GM141799 · NIGMS · STANFORD UNIVERSITY · PI CHAITAN KHOSLA · 2021 to 2026
$2.5M
Comprehensive analysis of macromolecule structural variability in CryoEM/CryoETR01GM150905 · NIGMS · STANFORD UNIVERSITY · PI Muyuan Chen · 2023 to 2026
$1.5M
Mechanistic Studies of Polyketide Synthases Enabled by Unnatural Amino Acids and Antibody Fragment Structural ToolsF32GM136039 · NIGMS · STANFORD UNIVERSITY · PI COGAN, DILLON P · 2020 to 2022
$196k
National Science Foundation (NSF) DGE-1656518NIGMS NIH HHS F32 GM136039NIGMS NIH HHS R01 GM150905NIGMS NIH HHS R35 GM141799NIGMS NIH HHS U24 GM129541U.S. Department of Health & Human Services | National Institutes of Health (NIH) F32GM136039U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM150905U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM141799
6 · The paper itself

Abstract

Assembly-line polyketide synthases (PKSs) are modular multi-enzyme systems with considerable potential for genetic reprogramming. Understanding how they selectively transport biosynthetic intermediates along a defined sequence of active sites could be harnessed to rationally alter PKS product structures. To investigate functional interactions between PKS catalytic and substrate acyl carrier protein (ACP) domains, we employed a bifunctional reagent to crosslink transient domain-domain interfaces of a prototypical assembly line, the 6-deoxyerythronolide B synthase, and resolved their structures by single-particle cryogenic electron microscopy (cryo-EM). Together with statistical per-particle image analysis of cryo-EM data, we uncovered interactions between ketosynthase (KS) and ACP domains that discriminate between intra-modular and inter-modular communication while reinforcing the relevance of conformational asymmetry during the catalytic cycle. Our findings provide a foundation for the structure-based design of hybrid PKSs comprising biosynthetic modules from different naturally occurring assembly lines.

Indexed as

PolyketidesPolyketide SynthasesAcyl Carrier ProteinCatalytic DomainCryoelectron MicroscopyModels, MolecularAcyl Carrier ProteinPolyketidesPolyketide Synthases

Identifiers

PMID39179672
PMCPMC11909739

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.