Evidence map›Paper›PMID 39179629›Full record

ArticleScientific reports2024

Machine learning approaches to detect hepatocyte chromatin alterations from iron oxide nanoparticle exposure.

Jovana Paunovic Pantic, Danijela Vucevic, Tatjana Radosavljevic, Peter R Corridon, Svetlana Valjarevic, Jelena Cumic, Ljubisa Bojic, Igor Pantic

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jovana Paunovic PanticDepartment of Pathophysiology, Faculty of Medicine, University of Belgrade, Dr. Subotica 9, 11129, Belgrade, Serbia.
Danijela VucevicDepartment of Pathophysiology, Faculty of Medicine, University of Belgrade, Dr. Subotica 9, 11129, Belgrade, Serbia.
Tatjana RadosavljevicDepartment of Pathophysiology, Faculty of Medicine, University of Belgrade, Dr. Subotica 9, 11129, Belgrade, Serbia.
Peter R CorridonDepartment of Immunology and Physiology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, UAE. peter.corridon@ku.ac.ae.ORCID 0000-0002-6796-4301
Svetlana ValjarevicFaculty of Medicine, Clinical Hospital Center Zemun, University of Belgrade, Vukova 9, 11000, Belgrade, Serbia.
Jelena CumicFaculty of Medicine, University of Belgrade, University Clinical Centre of Serbia, Dr. Koste Todorovića 8, 11129, Belgrade, Serbia.
Ljubisa BojicInstitute for Artificial Intelligence Research and Development of Serbia, Fruškogorska 1, 21000, Novi Sad, Serbia.
Igor PanticDepartment of Medical Physiology, Faculty of Medicine, University of Belgrade, Visegradska 26/II, 11129, Belgrade, Serbia. igor.pantic@med.bg.ac.rs.ORCID 0000-0001-6589-8964

Funding

Khalifa University of Science, Technology and Research RC2-2018-022 (HEIC)Science Fund of the Republic of Serbia 7739645
6 · The paper itself

Abstract

This study focuses on developing machine learning models to detect subtle alterations in hepatocyte chromatin organization due to Iron (II, III) oxide nanoparticle exposure, hypothesizing that exposure will significantly alter chromatin texture. A total of 2000 hepatocyte nuclear regions of interest (ROIs) from mouse liver tissue were analyzed, and for each ROI, 5 different parameters were calculated: Long Run Emphasis, Short Run Emphasis, Run Length Nonuniformity, and 2 wavelet coefficient energies obtained after the discrete wavelet transform. These parameters served as input for supervised machine learning models, specifically random forest and gradient boosting classifiers. The models demonstrated relatively robust performance in distinguishing hepatocyte chromatin structures belonging to the group exposed to IONPs from the controls. The study's findings suggest that iron oxide nanoparticles induce substantial changes in hepatocyte chromatin distribution and underscore the potential of AI techniques in advancing hepatocyte evaluation in physiological and pathological conditions.

Indexed as

ChromatinHepatocytesMachine LearningAnimalsFerric CompoundsLiverMagnetic Iron Oxide NanoparticlesMaleMiceChromatinFerric Compoundsferric oxideGradient boostingMachine learningNucleusRandom forestToxicology

Identifiers

PMID39179629
PMCPMC11344034

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.