Evidence map›Paper›PMID 39179528›Full record

ArticleNature communications2024

Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments.

Ryutaro Kobayashi, Yuri Ohkubo, Mai Izumi, Ryosuke Ota, Keiko Yamada, Yoko Hayashi, Yasuko Yamashita, Saki Noda, Mari Ogawa-Ohnishi, Yoshikatsu Matsubayashi

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Emerging roles of glutaredoxins in plant metabolism.Journal of experimental botany · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ryutaro Kobayashi *Graduate School of Science, Nagoya University, Nagoya, Japan.
Yuri Ohkubo *Graduate School of Science, Nagoya University, Nagoya, Japan.ORCID 0000-0001-9228-6293
Mai IzumiGraduate School of Science, Nagoya University, Nagoya, Japan.
Ryosuke OtaGraduate School of Science, Nagoya University, Nagoya, Japan.
Keiko YamadaGraduate School of Science, Nagoya University, Nagoya, Japan.
Yoko HayashiGraduate School of Science, Nagoya University, Nagoya, Japan.
Yasuko YamashitaGraduate School of Science, Nagoya University, Nagoya, Japan.
Saki NodaGraduate School of Science, Nagoya University, Nagoya, Japan.
Mari Ogawa-OhnishiGraduate School of Science, Nagoya University, Nagoya, Japan.ORCID 0000-0002-7581-2607
Yoshikatsu MatsubayashiGraduate School of Science, Nagoya University, Nagoya, Japan. matsu@bio.nagoya-u.ac.jp.ORCID 0000-0002-2669-2119

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 20H05907MEXT | Japan Society for the Promotion of Science (JSPS) 22KJ1616MEXT | Japan Society for the Promotion of Science (JSPS) 23H05477MEXT | Japan Society for the Promotion of Science (JSPS) 24KJ18137
6 · The paper itself

Abstract

Unlike plants in the field, which experience significant temporal fluctuations in environmental conditions, plants in the laboratory are typically grown in controlled, stable environments. Therefore, signaling pathways evolved for survival in fluctuating environments often remain functionally latent in laboratory settings. Here, we show that TGA1 and TGA4 act as hub transcription factors through which the expression of genes involved in high-affinity nitrate uptake are regulated in response to shoot-derived phloem mobile polypeptides, CEP DOWNSTREAM 1 (CEPD1), CEPD2 and CEPD-like 2 (CEPDL2) as nitrogen (N) deficiency signals, and Glutaredoxin S1 (GrxS1) to GrxS8 as N sufficiency signals. CEPD1/2/CEPDL2 and GrxS1-S8 competitively bind to TGA1/4 in roots, with the former acting as transcription coactivators that enhance the uptake of nitrate, while the latter function as corepressor complexes together with TOPLESS (TPL), TPL-related 1 (TPR1) and TPR4 to limit nitrate uptake. Arabidopsis plants deficient in TGA1/4 maintain basal nitrate uptake and exhibit growth similar to wild-type plants in a stable N environment, but are impaired in regulation of nitrate acquisition in response to shoot N demand, leading to defective growth under fluctuating N environments where rhizosphere nitrate ions switch periodically between deficient and sufficient states. TGA1/4 are crucial transcription factors that enable plants to survive under fluctuating and challenging N environmental conditions.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantNitratesNitrogenPlant RootsPlant ShootsSignal TransductionTranscription FactorsBasic-Leucine Zipper Transcription FactorsPeptidesArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsNitratesNitrogenPeptidesTranscription Factors

Identifiers

PMID39179528
PMCPMC11344143

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.