Evidence map›Paper›PMID 39178369›Full record

Trial reportJCO precision oncology2024

Combined Transcriptome and Circulating Tumor DNA Longitudinal Biomarker Analysis Associates With Clinical Outcomes in Advanced Solid Tumors Treated With Pembrolizumab.

Alberto Hernando-Calvo, S Y Cindy Yang, Maria Vila-Casadesús, Ming Han, Zhihui Amy Liu, A Hal K Berman, Anna Spreafico, Albiruni Abdul Razak, Stephanie Lheureux, Aaron R Hansen and 15 more

Registry-linked trialAbstract readClinical Trial, Phase II
In one paragraph

Trial report in JCO precision oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02644369 (Investigator-initiated Phase II Study of Pembrolizumab Immunological Response Evaluation), which is not on this map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02644369 phase2active not recruitingnot on this map

Investigator-initiated Phase II Study of Pembrolizumab Immunological Response Evaluation

TypeinterventionalSponsorUniversity Health Network, TorontoRan2016 to 2026Enrolled100ConditionsSquamous Cell Cancer of Head and Neck, Triple Negative Breast Cancer, Epithelial Ovarian Cancer, Malignant MelanomaArmsPembrolizumab
3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Circulating Tumor DNA as a Biomarker for Melanoma Prognosis and Therapy.American journal of clinical dermatology · 2026
    Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Interferon Epsilon Loss Is Elusive 9p21 Link to Immune-Cold Tumors, Resistant to Immune Checkpoint Therapy, and Endogenous CXCL9/10 Induction.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2025
    Review
  11. Article
  12. Review
  13. Overview on biomarkers for immune oncology drugs.Exploration of targeted anti-tumor therapy · 2025
    Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Alberto Hernando-CalvoDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0002-1692-1125
S Y Cindy YangPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Maria Vila-CasadesúsVall d'Hebron Institute of Oncology, Barcelona, Spain.ORCID 0000-0001-6597-7953
Ming HanPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0002-0136-2412
Zhihui Amy LiuPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
A Hal K BermanPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Anna SpreaficoDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Albiruni Abdul RazakDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0001-7657-9950
Stephanie LheureuxDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0003-4405-5890
Aaron R HansenDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0002-2363-8707
Deborah Lo GiaccoVall d'Hebron Institute of Oncology, Barcelona, Spain.
Farnoosh Abbas-AghababazadehPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Judith MatitoVall d'Hebron Institute of Oncology, Barcelona, Spain.
Benjamin Haibe-KainsPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Trevor J PughPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0002-8073-5888
Scott V BratmanPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0001-8610-4908
Alexey AleshinNatera, Austin, TX.ORCID 0000-0002-9731-5628
Roger BercheVall d'Hebron Institute of Oncology, Barcelona, Spain.
Omar SaavedraVall d'Hebron Institute of Oncology, Barcelona, Spain.ORCID 0000-0003-4160-791X
Elena GarraldaVall d'Hebron Institute of Oncology, Barcelona, Spain.ORCID 0000-0002-4412-7842
Sawako ElstonPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0009-0006-2524-2630
Lillian L SiuDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Pamela S OhashiPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0003-2915-9317
Ana VivancosVall d'Hebron Institute of Oncology, Barcelona, Spain.ORCID 0000-0003-2888-6512
Philippe L BedardDivision of Medical Oncology and Hematology, Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID 0000-0002-6771-2999

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeImmune gene expression signatures are emerging as potential biomarkers for immunotherapy (IO). VIGex is a 12-gene expression classifier developed in both nCounter (Nanostring) and RNA sequencing (RNA-seq) assays and analytically validated across laboratories. VIGex classifies tumor samples into hot, intermediate-cold (I-Cold), and cold subgroups. VIGex-Hot has been associated with better IO treatment outcomes. Here, we investigated the performance of VIGex and other IO biomarkers in an independent data set of patients treated with pembrolizumab in the INSPIRE phase II clinical trial (ClinicalTrials.gov identifier: NCT02644369). MATERIALS AND

methodsPatients with advanced solid tumors were treated with pembrolizumab 200 mg IV once every 3 weeks. Tumor RNA-seq data from baseline tumor samples were classified by the VIGex algorithm. Circulating tumor DNA (ctDNA) was measured at baseline and start of cycle 3 using the bespoke Signatera assay. VIGex-Hot was compared with VIGex I-Cold + Cold and four groups were defined on the basis of the combination of VIGex subgroups and the change in ctDNA at cycle 3 from baseline (ΔctDNA).

resultsSeventy-six patients were enrolled, including 16 ovarian, 12 breast, 12 head and neck cancers, 10 melanoma, and 26 other tumor types. Objective response rate was 24% in VIGex-Hot and 10% in I-Cold/Cold. VIGex-Hot subgroup was associated with higher overall survival (OS) and progression-free survival (PFS) when included in a multivariable model adjusted for tumor type, tumor mutation burden, and PD-L1 immunohistochemistry. The addition of ΔctDNA improved the predictive performance of the baseline VIGex classification for both OS and PFS.

conclusionOur data indicate that the addition of ΔctDNA to baseline VIGex may refine prediction for IO.

Indexed as

Antibodies, Monoclonal, HumanizedAntineoplastic Agents, ImmunologicalBiomarkers, TumorCirculating Tumor DNANeoplasmsTranscriptomeAdultAgedFemaleHumansMaleMiddle AgedTreatment OutcomeAntibodies, Monoclonal, HumanizedAntineoplastic Agents, ImmunologicalBiomarkers, TumorCirculating Tumor DNApembrolizumab

Identifiers

PMID39178369
PMCPMC11371115

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.