Evidence map›Paper›PMID 39178226›Full record

ArticlePloS one2024

Comprehensive analysis of transcriptomics and metabolomics provides insights into the mechanism by plant growth regulators affect the quality of jujube (Ziziphus jujuba Mill.) fruit.

Defen Liu, Na Jiang, Yuting Yuan, Hejiang Liu, Yanjun Ju, Wanjin Sun, Wenzhao Jia, Yi Fang, Duoyong Zhao, Jiefei Mao and 1 more

Erratum issuedAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Defen LiuXinjiang Academy of Agricultural Sciences Institute of Agricultural Quality Standards and Testing Technology/Xinjiang Key Laboratory of Agricultural Product Quality and Safety, Urumqi, China.
Na JiangXinjiang Academy of Agricultural Sciences Institute of Agricultural Quality Standards and Testing Technology/Xinjiang Key Laboratory of Agricultural Product Quality and Safety, Urumqi, China.
Yuting YuanXinjiang Academy of Agricultural Sciences Institute of Agricultural Quality Standards and Testing Technology/Xinjiang Key Laboratory of Agricultural Product Quality and Safety, Urumqi, China.
Hejiang LiuXinjiang Academy of Agricultural Sciences Institute of Agricultural Quality Standards and Testing Technology/Xinjiang Key Laboratory of Agricultural Product Quality and Safety, Urumqi, China.
Yanjun JuXinjiang Academy of Agricultural Sciences Institute of Agricultural Quality Standards and Testing Technology/Xinjiang Key Laboratory of Agricultural Product Quality and Safety, Urumqi, China.
Wanjin SunSocial Affairs Service Center of the Eighth Regiment of the First Division of Xinjiang Production and Construction Corps, Alar, China.
Wenzhao JiaAgricultural Development Service Center of the Eighth Regiment of the First Division of Xinjiang Production and Construction Corps, Alar, China.
Yi FangAgricultural Development Service Center of the Eighth Regiment of the First Division of Xinjiang Production and Construction Corps, Alar, China.
Duoyong ZhaoXinjiang Academy of Agricultural Sciences Institute of Agricultural Quality Standards and Testing Technology/Xinjiang Key Laboratory of Agricultural Product Quality and Safety, Urumqi, China.
Jiefei MaoCollege of Food Science and Pharmacy, Xinjiang Agricultural University, Urumqi, China.ORCID 0000-0002-5225-1747
Lu KangXinjiang Academy of Agricultural Sciences Institute of Agricultural Quality Standards and Testing Technology/Xinjiang Key Laboratory of Agricultural Product Quality and Safety, Urumqi, China.ORCID 0000-0001-8822-5818

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A comprehensively analysis of the transcriptomics and metabolomics was conducted to investigate the mechanism of plant growth regulators on the quality of jujube fruit. After the application of plant growth regulators, a total of 3097 differentially expressed genes (DEGs) were identified, which were mainly annotated in 123 pathways such as flavonoid biosynthesis, metabolism of alanine, aspartate, and glutamate. In addition, 1091 differential expressed metabolites (DEMs), including 519 up-regulated and 572 down-regulated metabolites, were significantly altered after application of plant growth regulators. DEGs and DEMs simultaneously annotated 69 metabolic pathways, including biosynthesis of phenylpropane, flavonoid, starch and sucrose. The key genes in flavonoid biosynthesis pathway were revealed, which may play an important role in plant growth regulator regulation quality of jujube fruit. Besides, the application of plant growth regulator during the jujube flowering period increased the contents of gibberellin and indole-3-acetic acid in leaves, and decreased the contents of abscisic acid. The results may help to reveal the metabolic network and molecular mechanism of plant growth regulators in jujube fruit.

Indexed as

FruitGene Expression Regulation, PlantMetabolomicsPlant Growth RegulatorsTranscriptomeZiziphusFlavonoidsGene Expression ProfilingFlavonoidsPlant Growth Regulators

Identifiers

PMID39178226
PMCPMC11343422

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.