Evidence map›Paper›PMID 39178184›Full record

ArticlePloS one2024

RNA editing regulates host immune response and T cell homeostasis in SARS-CoV-2 infection.

Molly Huang, Adam Mark, Jessica Pham, Karina Vera, Amanda M Saravia-Butler, Afshin Beheshti, Qingfei Jiang, Kathleen M Fisch

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Molly HuangDepartment of Obstetrics, Gynecology & Reproductive Sciences, University of California San Diego, La Jolla, California, United States of America.
Adam MarkCenter for Computational Biology & Bioinformatics, University of California San Diego, La Jolla, California, United States of America.
Jessica PhamDivision of Regenerative Medicine and Moores Cancer Center, University of California San Diego, La Jolla, California, United States of America.
Karina VeraDepartment of Obstetrics, Gynecology & Reproductive Sciences, University of California San Diego, La Jolla, California, United States of America.
Amanda M Saravia-ButlerKBR, Space Biosciences Division, NASA Ames Research Center, Moffett Field, California, United States of America.
Afshin BeheshtiBlue Marble Space Institute of Science, Seattle, Washington, United States of America.
Qingfei JiangDivision of Regenerative Medicine and Moores Cancer Center, University of California San Diego, La Jolla, California, United States of America.
Kathleen M FischDepartment of Obstetrics, Gynecology & Reproductive Sciences, University of California San Diego, La Jolla, California, United States of America.ORCID 0000-0002-0117-7444

Funding

UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
Elucidate the Role of RNA Editing in Acute T-cell Lymphoblastic Leukemia Initiating CellsR01CA282792 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Qingfei Jiang · 2024 to 2026
$1.4M
Investigating the role of epitranscriptomic A-to-I RNA editing in T-cell acute lymphoblastic leukemiaK22CA229606 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIANG, QINGFEI · 2019 to 2021
$574k
Profiling Epitranscriptomic RNA editing in Pediatric CancerR03CA287274 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIANG, QINGFEI · 2024 to 2025
$316k
NCATS NIH HHS UL1 TR001442NCI NIH HHS K22 CA229606NCI NIH HHS R01 CA282792NCI NIH HHS R03 CA287274
6 · The paper itself

Abstract

Adenosine to inosine (A-to-I) RNA editing by ADAR1 has been implicated in maintaining self-tolerance, preventing autoimmunity, and mediating antiviral immunity. Foreign viral double-stranded RNA triggers rapid interferon response and activates ADAR1 in the host immune system. Emerging data points to a role of ADAR1 A-to-I editing in the inflammatory response associated with severe COVID-19 disease. We identify A-to-I editing events within human whole transcriptome data from SARS-CoV-2 infected individuals, non-infected individuals, and individuals with other viral illnesses from nasopharyngeal swabs. High levels of RNA editing in host cells are associated with low SARS-CoV-2 viral load (p = 9.27 E-06), suggesting an inhibitory effect of ADAR1 on viral infection. Additionally, we find differentially expressed genes associated with RNA-modifications and interferon response. Single cell RNA-sequencing analysis of SARS-CoV-2 infected nasopharyngeal swabs reveals that cytotoxic CD8 T cells upregulate ADAR1 in COVID-19 positive samples (p = 0.0269). We further reveal ADAR1 expression increases with CD4 and CD8 T cell activation, and knockdown of ADAR1 leads to apoptosis and aberrant IL-2 secretion. Together, our data suggests A-to-I RNA editing is required to maintain healthy homeostasis of activated T cells to combat SARS-CoV-2 infection.

Indexed as

Adenosine DeaminaseCOVID-19HomeostasisRNA-Binding ProteinsRNA EditingSARS-CoV-2AdenosineCD8-Positive T-LymphocytesHumansInosineLymphocyte ActivationT-LymphocytesViral LoadADAR protein, humanAdenosineAdenosine DeaminaseInosineRNA-Binding Proteins

Identifiers

PMID39178184
PMCPMC11343423

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.