Evidence map›Paper›PMID 39176629›Full record

ArticleStudies in health technology and informatics2024

Active Learning Pipeline to Identify Candidate Terms for a CDSS Ontology.

Xia Jing, Rohan Goli, Keerthana Komatineni, Shailesh Alluri, Nina Hubig, Hua Min, Yang Gong, Dean F Sittig, Paul Biondich, David Robinson and 6 more

Abstract read
In one paragraph

Article in Studies in health technology and informatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Xia JingDepartment of Public Health Sciences, College of Behavioral, Social, and Health Sciences, Clemson University, Clemson, SC, USA.
Rohan GoliSchool of Computing, College of Engineering, Computing and Applied Science, Clemson University, Clemson, SC, USA.
Keerthana KomatineniSchool of Computing, College of Engineering, Computing and Applied Science, Clemson University, Clemson, SC, USA.
Shailesh AlluriSchool of Computing, College of Engineering, Computing and Applied Science, Clemson University, Clemson, SC, USA.
Nina HubigSchool of Computing, College of Engineering, Computing and Applied Science, Clemson University, Clemson, SC, USA.
Hua MinDepartment of Health Administration and Policy, College of Health and Human Services, George Mason University, Fairfax, VA, USA.
Yang GongSchool of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Dean F SittigSchool of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Paul BiondichIndiana University and Regenstrief Institute, Indianapolis, IN, USA.
David RobinsonGeneral Practitioner/Independent Consultant, Cumbria, UK.
Christian NøhrAalborg University, Aalborg, Denmark.
Arild FaxvaagNorwegian University of Science and Technology, Trondheim, Norway.
Adam WrightVanderbilt University Medical Center, Nashville, TN, USA.
Timothy LawHigh Mark Blue Cross Blue Shield, PA, USA.
Lior RennertDepartment of Public Health Sciences, College of Behavioral, Social, and Health Sciences, Clemson University, Clemson, SC, USA.
Ronald GimbelDepartment of Public Health Sciences, College of Behavioral, Social, and Health Sciences, Clemson University, Clemson, SC, USA.

Funding

Tissue Structural and Neural Remodeling in Human Sacroiliac JointP20GM121342 · NIGMS · CLEMSON UNIVERSITY · PI Hai Yao · 2018 to 2026
$24.7M
Open, interoperable, and configurable clinical decision support modules for OpenMRS, OpenEMR, and beyondR01GM138589 · NIGMS · CLEMSON UNIVERSITY · PI JING, XIA · 2020 to 2024
$1.9M
NIGMS NIH HHS P20 GM121342NIGMS NIH HHS R01 GM138589
6 · The paper itself

Abstract

Ontology is essential for achieving health information and information technology application interoperability in the biomedical fields and beyond. Traditionally, ontology construction is carried out manually by human domain experts (HDE). Here, we explore an active learning approach to automatically identify candidate terms from publications, with manual verification later as a part of a deep learning model training and learning process. We introduce the overall architecture of the active learning pipeline and present some preliminary results. This work is a critical and complementary component in addition to manually building the ontology, especially during the long-term maintenance stage.

Indexed as

Biological OntologiesHumansProblem-Based LearningSupervised Machine LearningTerminology as TopicVocabulary, Controlledactive learningautomatic keyphrase identificationClinical decision support system ontologydeep learningnatural language processing

Identifiers

PMID39176629
PMCPMC12149559

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.