Evidence map›Paper›PMID 39176223›Full record

ArticleFrontiers in virology (Lausanne, Switzerland)2022

MSH3 Homology and Potential Recombination Link to SARS-CoV-2 Furin Cleavage Site.

Balamurali K Ambati, Akhil Varshney, Kenneth Lundstrom, Giorgio Palú, Bruce D Uhal, Vladimir N Uversky, Adam M Brufsky

Abstract read
In one paragraph

Article in Frontiers in virology (Lausanne, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Balamurali K AmbatiKnight's Campus for Accelerating Scientific Impact, University of Oregon, Eugene, OR, United States.
Akhil VarshneyDr. Shroff's Charity Eye Hospital, New Delhi, India.
Kenneth LundstromPanTherapeutics, Lutry, Switzerland.
Giorgio PalúDepartment of Molecular Medicine, University of Padova, Padova, Italy.
Bruce D UhalDepartment of Physiology, Michigan State University, East Lansing, MI, United States.
Vladimir N UverskyDepartment of Molecular Medicine, Morsani College of Medicine, University of South Florida (USF) Health Byrd Alzheimer's Institute, University of South Florida, Tampa, FL, United States.
Adam M BrufskyDivision of Hematology/Oncology, Department of Medicine, University of Pittsburgh Medical Center (UPMC) Hillman Cancer Center, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States.

Funding

CONTROL OF TYPE II PNEUMOCYTE PROLIFERATIONR01HL045136 · NHLBI · RUSH UNIVERSITY MEDICAL CENTER · PI UHAL, BRUCE D · 1996 to 2012
$2.9M
NHLBI NIH HHS R01 HL045136
6 · The paper itself

Abstract

Among numerous point mutation differences between the SARS-CoV-2 and the bat RaTG13 coronavirus, only the 12-nucleotide furin cleavage site (FCS) exceeds 3 nucleotides. A BLAST search revealed that a 19 nucleotide portion of the SARS.Cov2 genome encompassing the furing cleavage site is a 100% complementary match to a codon-optimized proprietary sequence that is the reverse complement of the human mutS homolog (MSH3). The reverse complement sequence present in SARS-CoV-2 may occur randomly but other possibilities must be considered. Recombination in an intermediate host is an unlikely explanation. Single stranded RNA viruses such as SARS-CoV-2 utilize negative strand RNA templates in infected cells, which might lead through copy choice recombination with a negative sense SARS-CoV-2 RNA to the integration of the MSH3 negative strand, including the FCS, into the viral genome. In any case, the presence of the 19-nucleotide long RNA sequence including the FCS with 100% identity to the reverse complement of the MSH3 mRNA is highly unusual and requires further investigations.

Indexed as

furin cleavage siteMSH3 generecombinabilitySARS-CoV-2 spikesequence homology

Identifiers

PMID39176223
PMCPMC11340822

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.