Evidence map›Paper›PMID 39175035›Full record

ArticleBiology direct2024

Unveiling the unique role of TSPAN7 across tumors: a pan-cancer study incorporating retrospective clinical research and bioinformatic analysis.

Bingnan Lu, Yifan Liu, Yuntao Yao, Dawei Zhu, Xiangmin Zhang, Keqin Dong, Xiao Xu, Donghao Lv, Zihui Zhao, Haoyu Zhang and 7 more

Abstract read
In one paragraph

Article in Biology direct, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Bingnan Lu *Department of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Yifan Liu *Department of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Yuntao Yao *Department of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Dawei Zhu *Department of Urology, the Second People's Hospital of Pinghu, Zhejiang, 314200, China.
Xiangmin ZhangDepartment of Urology, Shanghai Baoshan Luodian Hospital, Shanghai, 201908, China.
Keqin DongDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Xiao XuDepartment of Urology, the Second People's Hospital of Pinghu, Zhejiang, 314200, China.
Donghao LvDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Zihui ZhaoDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Haoyu ZhangDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Xinyue YangDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Wenjia FuDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China.
Runzhi HuangDepartment of Burn Surgery, the First Affiliated Hospital of Naval Medical University, Shanghai, 200433, China. runzhihuang2022@163.com.
Jianwei CaoDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China. caojianwei8613@xinhuamed.com.cn.
Jian ChuDepartment of Urology, Shanghai Baoshan Luodian Hospital, Shanghai, 201908, China. doctor_chu@126.com.
Xiuwu PanDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China. panxiuwu@126.com.
Xingang CuiDepartment of Urology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, No.1665 Kongjiang Road, Shanghai, 200092, China. cuixingang@xinhuamed.com.cn.

Funding

2022 medical health key project of Science and Technology Commission of Baoshan District 2023-E-37Baoshan District Health Commission Key Subject Construction Project BSZK-2023-A06Hospital Funded Clinical Research, Xinhua Hospital Affiliated to Shanghai Jiao Tong University School of Medicine 21XHDB06Jiaxing Science and Technology Plan Project 2022-2Leading health talents of Shanghai Municipal Health Commission 2022LJ002National Natural Science Foundation of China 82173265National Natural Science Foundation of China 82330094Natural Science Foundation of Shanghai Municipality 23ZR1441300Shanghai Rising-Star Program 23QC1401400Shanghai Rising-Star Program (Sailing Special Program) 23YF1458400
6 · The paper itself

Abstract

backgroundTSPAN7 is an important factor in tumor progression. However, the precise function of TSPAN7 and its role in pan-cancer are not clear.

methodsBased on Xinhua cohort incorporating 370 patients with kidney neoplasm, we conducted differential expression analysis by immunohistochemistry between tumor and normal tissues, and explored correlations of TSPAN7 with patients' survival. Subsequently, we conducted a pan-cancer study, and successively employed differential expression analysis, competing endogenous RNA (ceRNA) analysis, protein-protein interaction (PPI) analysis, correlation analysis of TSPAN7 with clinical characteristics, tumor purity, tumor genomics, tumor immunity, and drug sensitivity. Last but not least, gene set enrichment analysis was applied to identify enriched pathways of TSPAN7.

resultsIn Xinhua cohort, TSPAN7 expression was significantly up-regulated (P-value = 0.0019) in tumor tissues of kidney neoplasm patients. High TSPAN7 expression was associated with decreases in overall survival (OS) (P-value = 0.009) and progression-free survival (P-value = 0.009), and it was further revealed as an independent risk factor for OS (P-value = 0.0326, HR = 5.66, 95%CI = 1.155-27.8). In pan-cancer analysis, TSPAN7 expression was down-regulated in most tumors, and it was associated with patients' survival, tumor purity, tumor genomics, tumor immunity, and drug sensitivity. The ceRNA network and PPI network of TSPAN7 were also constructed. Last but not least, the top five enriched pathways of TSPAN7 in various tumors were identified.

conclusionTSPAN7 served as a promising biomarker of various tumors, especially kidney neoplasms, and it was closely associated with tumor purity, tumor genomics, tumor immunology, and drug sensitivity in pan-cancer level.

Indexed as

Computational BiologyKidney NeoplasmsTetraspaninsBiomarkers, TumorFemaleGene Expression Regulation, NeoplasticHumansMaleMiddle AgedNeoplasmsNerve Tissue ProteinsPrognosisRetrospective StudiesBiomarkers, TumorNerve Tissue ProteinsTetraspaninsTSPAN7 protein, humanBiomarkerKidney neoplasmPan-cancerTSPAN7Tumor immunology

Identifiers

PMID39175035
PMCPMC11340126

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.