Evidence map›Paper›PMID 39174537›Full record

ArticleNature communications2024

A NAC triad modulates plant immunity by negatively regulating N-hydroxy pipecolic acid biosynthesis.

Jianghua Cai, Sayantan Panda, Yana Kazachkova, Eden Amzallag, Zhengguo Li, Sagit Meir, Ilana Rogachev, Asaph Aharoni

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. MT@SiOPlant biotechnology journal · 2026
    Article
  7. Cells · 2025
    Article
  8. Article
  9. Current issues in molecular biology · 2025
    Article
  10. Article
  11. The molecular mechanism of leaf margin fission inFrontiers in plant science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jianghua CaiDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0005-6714-2518
Sayantan PandaDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
Yana KazachkovaDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
Eden AmzallagThe Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel.
Zhengguo LiKey Laboratory of Plant Hormone Regulation and Molecular Breeding of Chongqing, School of Life Sciences, Chongqing University, Chongqing, China.ORCID 0000-0001-7019-2560
Sagit MeirDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-7102-3152
Ilana RogachevDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-4452-2145
Asaph AharoniDepartment of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel. asaph.aharoni@weizmann.ac.il.ORCID 0000-0002-6077-1590

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N-hydroxy pipecolic acid (NHP) plays an important role in plant immunity. In contrast to its biosynthesis, our current knowledge with respect to the transcriptional regulation of the NHP pathway is limited. This study commences with the engineering of Arabidopsis plants that constitutively produce high NHP levels and display enhanced immunity. Label-free proteomics reveals a NAC-type transcription factor (NAC90) that is strongly induced in these plants. We find that NAC90 is a target gene of SAR DEFICIENT 1 (SARD1) and induced by pathogen, salicylic acid (SA), and NHP. NAC90 knockout mutants exhibit constitutive immune activation, earlier senescence, higher levels of NHP and SA, as well as increased expression of NHP and SA biosynthetic genes. In contrast, NAC90 overexpression lines are compromised in disease resistance and accumulated reduced levels of NHP and SA. NAC90 could interact with NAC61 and NAC36 which are also induced by pathogen, SA, and NHP. We next discover that this protein triad directly represses expression of the NHP and SA biosynthetic genes AGD2-LIKE DEFENSE RESPONSE PROTEIN 1 (ALD1), FLAVIN MONOOXYGENASE 1 (FMO1), and ISOCHORISMATE SYNTHASE 1 (ICS1). Constitutive immune response in nac90 is abolished once blocking NHP biosynthesis in the fmo1 background, signifying that NAC90 negative regulation of immunity is mediated via NHP biosynthesis. Our findings expand the currently documented NHP regulatory network suggesting a model that together with NHP glycosylation, NAC repressors take part in a 'gas-and-brake' transcriptional mechanism to control NHP production and the plant growth and defense trade-off.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantPipecolic AcidsPlant ImmunitySalicylic AcidTranscription FactorsDisease ResistancePlant DiseasesPlants, Genetically ModifiedProteomicsArabidopsis Proteinspipecolic acidPipecolic AcidsSalicylic AcidSARD1 protein, ArabidopsisTranscription Factors

Identifiers

PMID39174537
PMCPMC11341717

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.