Evidence map›Paper›PMID 39174536›Full record

ArticleNature communications2024

A lumen-tunable triangular DNA nanopore for molecular sensing and cross-membrane transport.

Xiaoming Liu, Fengyu Liu, Hemani Chhabra, Christopher Maffeo, Zhuo Chen, Qiang Huang, Aleksei Aksimentiev, Tatsuo Arai

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Specific ATP Detection Using Molecule-Responsive DNA Nanopores.Small (Weinheim an der Bergstrasse, Germany) · 2025
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xiaoming Liu *School of Mechatronical Engineering, Beijing Institute of Technology, Beijing, China. liuxiaoming555@bit.edu.cn.ORCID 0000-0003-0230-2742
Fengyu Liu *School of Mechatronical Engineering, Beijing Institute of Technology, Beijing, China.ORCID 0000-0002-1576-9766
Hemani ChhabraDepartment of Physics, University of Illinois at Urbana Champaign, Urbana, IL, USA.ORCID 0009-0008-3211-5693
Christopher MaffeoDepartment of Physics, University of Illinois at Urbana Champaign, Urbana, IL, USA.ORCID 0000-0001-9927-1502
Zhuo ChenSchool of Mechatronical Engineering, Beijing Institute of Technology, Beijing, China.
Qiang HuangSchool of Mechatronical Engineering, Beijing Institute of Technology, Beijing, China.
Aleksei AksimentievDepartment of Physics, University of Illinois at Urbana Champaign, Urbana, IL, USA. aksiment@illinois.edu.ORCID 0000-0002-6042-8442
Tatsuo AraiSchool of Mechatronical Engineering, Beijing Institute of Technology, Beijing, China.

Funding

Human Frontier Science Program (HFSP) RGP0047/2020National Natural Science Foundation of China (National Science Foundation of China) 62273052Natural Science Foundation of Beijing Municipality (Beijing Natural Science Foundation) IS23062
6 · The paper itself

Abstract

Synthetic membrane nanopores made of DNA are promising systems to sense and control molecular transport in biosensing, sequencing, and synthetic cells. Lumen-tunable nanopore like the natural ion channels and systematically increasing the lumen size have become long-standing desires in developing nanopores. Here, we design a triangular DNA nanopore with a large tunable lumen. It allows in-situ transition from expanded state to contracted state without changing its stable triangular shape, and vice versa, in which specific DNA bindings as stimuli mechanically pinch and release the three corners of the triangular frame. Transmission electron microscopy images and molecular dynamics simulations illustrate the stable architectures and the high shape retention. Single-channel current recordings and fluorescence influx studies demonstrate the low-noise repeatable readouts and the controllable cross-membrane macromolecular transport. We envision that the proposed DNA nanopores could offer powerful tools in molecular sensing, drug delivery, and the creation of synthetic cells.

Indexed as

DNAMolecular Dynamics SimulationNanoporesBiological TransportBiosensing TechniquesMicroscopy, Electron, TransmissionNanotechnologyDNA

Identifiers

PMID39174536
PMCPMC11341817

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.