Evidence map›Paper›PMID 39173773›Full record

ArticleThe Science of the total environment2024

Estimating rates of change to interpret quantitative wastewater surveillance of disease trends.

David A Holcomb, Ariel Christensen, Kelly Hoffman, Allison Lee, A Denene Blackwood, Thomas Clerkin, Javier Gallard-Góngora, Angela Harris, Nadine Kotlarz, Helena Mitasova and 8 more

Abstract read
In one paragraph

Article in The Science of the total environment, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

David A HolcombDepartment of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Ariel ChristensenDepartment of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Occupational & Environmental Epidemiology Branch, Division of Public Health, North Carolina Department of Health and Human Services, Raleigh, NC, USA.
Kelly HoffmanDepartment of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Allison LeeDepartment of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
A Denene BlackwoodInstitute of Marine Sciences, Department of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Morehead City, NC, USA.
Thomas ClerkinInstitute of Marine Sciences, Department of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Morehead City, NC, USA.
Javier Gallard-GóngoraInstitute of Marine Sciences, Department of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Morehead City, NC, USA.
Angela HarrisDepartment of Civil, Construction and Environmental Engineering, North Carolina State University, Raleigh, NC, USA.
Nadine KotlarzDepartment of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
Helena MitasovaCenter for Geospatial Analytics, North Carolina State University, Raleigh, NC, USA; Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC, USA.
Stacie RecklingOccupational & Environmental Epidemiology Branch, Division of Public Health, North Carolina Department of Health and Human Services, Raleigh, NC, USA; Center for Geospatial Analytics, North Carolina State University, Raleigh, NC, USA.
Francis L de Los ReyesDepartment of Civil, Construction and Environmental Engineering, North Carolina State University, Raleigh, NC, USA.
Jill R StewartDepartment of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Virginia T GuidryOccupational & Environmental Epidemiology Branch, Division of Public Health, North Carolina Department of Health and Human Services, Raleigh, NC, USA.
Rachel T NobleDepartment of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Institute of Marine Sciences, Department of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Morehead City, NC, USA.
Marc L SerreDepartment of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Tanya P GarciaDepartment of Biostatistics, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Lawrence S EngelDepartment of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. Electronic address: Larry.Engel@unc.edu.

Funding

UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Hazel B Nichols · 2001 to 2026
$36.3M
Biostatstics for Research in Environmental HealthT32ES007018 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Stephanie Engel, Rebecca Fry · 1985 to 2026
$31.3M
Occupational Safety and Health and Education Research CenterT42OH008673 · OH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NYLANDER-FRENCH, LEENA A · 2005 to 2025
$27.3M
Landis Award for Outstanding Mentorship: Administrative Supplement to NS131225R01NS131225 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Tanya Pamela Garcia · 2023 to 2026
$2.2M
Improved scalability, sensitivity, and interpretability of pathogen detection, including SARS-CoV-2, in wastewater using high-throughput, highly multiplexed digital array PCR technologyU01DA053899 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI NOBLE, RACHEL TODD · 2021 to 2022
$1.7M
NIDA NIH HHS U01 DA053899NIEHS NIH HHS P30 ES010126NIEHS NIH HHS T32 ES007018NINDS NIH HHS R01 NS131225NIOSH CDC HHS T42 OH008673
6 · The paper itself

Abstract

backgroundWastewater monitoring data can be used to estimate disease trends to inform public health responses. One commonly estimated metric is the rate of change in pathogen quantity, which typically correlates with clinical surveillance in retrospective analyses. However, the accuracy of rate of change estimation approaches has not previously been evaluated.

objectivesWe assessed the performance of approaches for estimating rates of change in wastewater pathogen loads by generating synthetic wastewater time series data for which rates of change were known. Each approach was also evaluated on real-world data.

methodsSmooth trends and their first derivatives were jointly sampled from Gaussian processes (GP) and independent errors were added to generate synthetic viral load measurements; the range hyperparameter and error variance were varied to produce nine simulation scenarios representing different potential disease patterns. The directions and magnitudes of the rate of change estimates from four estimation approaches (two established and two developed in this work) were compared to the GP first derivative to evaluate classification and quantitative accuracy. Each approach was also implemented for public SARS-CoV-2 wastewater monitoring data collected January 2021-May 2023 at 25 sites in North Carolina, USA.

resultsAll four approaches inconsistently identified the correct direction of the trend given by the sign of the GP first derivative. Across all nine simulated disease patterns, between a quarter and a half of all estimates indicated the wrong trend direction, regardless of estimation approach. The proportion of trends classified as plateaus (statistically indistinguishable from zero) for the North Carolina SARS-CoV-2 data varied considerably by estimation method but not by site. DISCUSSION: Our results suggest that wastewater measurements alone might not provide sufficient data to reliably track disease trends in real-time. Instead, wastewater viral loads could be combined with additional public health surveillance data to improve predictions of other outcomes.

Indexed as

WastewaterCOVID-19Environmental MonitoringHumansNorth CarolinaSARS-CoV-2Viral LoadWastewater-Based Epidemiological MonitoringWastewaterGaussian process derivativesGeneralized additive modelSARS-CoV-2Simulation studyTime series analysisWastewater-based epidemiology

Identifiers

PMID39173773
PMCPMC11392626

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.