Evidence map›Paper›PMID 39172779›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure.

Abigail E Teitgen, Marcus T Hock, Kimberly J McCabe, Matthew C Childers, Gary A Huber, Bahador Marzban, Daniel A Beard, J Andrew McCammon, Michael Regnier, Andrew D McCulloch

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Modeling cardiac contractile cooperativity across species.The Journal of general physiology · 2025
    Article
  4. In defense of Huxley.Biophysical journal · 2024
    Article
  5. Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Abigail E TeitgenDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-5134-7261
Marcus T HockDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.
Kimberly J McCabeDepartment of Computational Physiology, Simula Research Laboratory, Oslo 0164, Norway.ORCID 0000-0001-9153-8313
Matthew C ChildersDepartment of Bioengineering, University of Washington, Seattle, WA 98109.ORCID 0000-0003-2440-9612
Gary A HuberDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093.
Bahador MarzbanDepartment of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, MI 48109.
Daniel A BeardDepartment of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, MI 48109.
J Andrew McCammonDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0003-3065-1456
Michael RegnierDepartment of Bioengineering, University of Washington, Seattle, WA 98109.ORCID 0000-0001-5437-9851
Andrew D McCullochDepartment of Bioengineering, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-1708-5675

Funding

National Biomedical Computation Resource - Competitive Revision SupplementP41GM103426 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2012 to 2019
$14.0M
Training In Cardiovascular Physiology & PharmacologyT32HL007444 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ju Chen, Robert Scott Ross · 1985 to 2026
$11.1M
CARDIOVASCULAR RESEARCH TRAINING PROGRAMT32HL007828 · NHLBI · UNIVERSITY OF WASHINGTON · PI Francis Kim, Farid Moussavi-Harami · 1997 to 2026
$10.2M
THEORY OF BIOMOLECULAR DIFFUSIONR01GM031749 · NIGMS · UNIVERSITY OF HOUSTON · PI HUBER, GARY ALEXANDER, MCCAMMON, JAMES ANDREW · 1985 to 2022
$7.8M
UW Center for Translational Muscle Research (Overall Application)P30AR074990 · NIAMS · UNIVERSITY OF WASHINGTON · PI Jennifer Michelle Davis, DANIEL RAFTERY · 2019 to 2026
$7.5M
Engineered Stem Cells for Cardiac RepairR01HL128368 · NHLBI · UNIVERSITY OF WASHINGTON · PI REGNIER, MICHAEL · 2018 to 2025
$6.1M
Multiscale Mechanobiology of Right Ventricular FailureR01HL154624 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Anthony J. BAKER, DANIEL A BEARD · 2020 to 2026
$4.9M
Systems Biology of Hypertrophic Heart Disease from Molecular Pathways to Organ SystemR01HL137100 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MCCULLOCH, ANDREW D. · 2017 to 2020
$2.0M
Multi-Scale Systems Analysis of Metabolic and Mechanical Determinants of Reserve Cardiac Power OutputR01HL173346 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DANIEL A BEARD · 2024 to 2026
$1.8M
American Heart Association (AHA) 906494HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL128368HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL137100HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL154624HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) T32HL007828HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM31749HHS | NIH | National Institute of General Medical Sciences (NIGMS) P41GM103426National Science Foundation (NSF) ACI-1548562National Science Foundation (NSF) TG-MCB200100NHLBI NIH HHS R01 HL128368NHLBI NIH HHS R01 HL137100NHLBI NIH HHS R01 HL154624NHLBI NIH HHS R01 HL173346NHLBI NIH HHS T32 HL007444NHLBI NIH HHS T32 HL007828NIAMS NIH HHS P30 AR074990NIGMS NIH HHS P41 GM103426NIGMS NIH HHS R01 GM031749NSF | National Science Foundation Graduate Research Fellowship Program (GRFP) DGE-2038238
6 · The paper itself

Abstract

2'-deoxy-ATP (dATP) improves cardiac function by increasing the rate of crossbridge cycling and Ca[Formula: see text] transient decay. However, the mechanisms of these effects and how therapeutic responses to dATP are achieved when dATP is only a small fraction of the total ATP pool remain poorly understood. Here, we used a multiscale computational modeling approach to analyze the mechanisms by which dATP improves ventricular function. We integrated atomistic simulations of prepowerstroke myosin and actomyosin association, filament-scale Markov state modeling of sarcomere mechanics, cell-scale analysis of myocyte Ca[Formula: see text] dynamics and contraction, organ-scale modeling of biventricular mechanoenergetics, and systems level modeling of circulatory dynamics. Molecular and Brownian dynamics simulations showed that dATP increases the actomyosin association rate by 1.9 fold. Markov state models predicted that dATP increases the pool of myosin heads available for crossbridge cycling, increasing steady-state force development at low dATP fractions by 1.3 fold due to mechanosensing and nearest-neighbor cooperativity. This was found to be the dominant mechanism by which small amounts of dATP can improve contractile function at myofilament to organ scales. Together with faster myocyte Ca[Formula: see text] handling, this led to improved ventricular contractility, especially in a failing heart model in which dATP increased ejection fraction by 16% and the energy efficiency of cardiac contraction by 1%. This work represents a complete multiscale model analysis of a small molecule myosin modulator from single molecule to organ system biophysics and elucidates how the molecular mechanisms of dATP may improve cardiovascular function in heart failure with reduced ejection fraction.

Indexed as

Deoxyadenine NucleotidesHeart FailureActomyosinAnimalsCalciumHumansMarkov ChainsModels, CardiovascularMyocardial ContractionMyocytes, CardiacMyosinsSarcomeresVentricular Function2'-deoxyadenosine triphosphateActomyosinCalciumDeoxyadenine NucleotidesMyosinscardiac functiondATPmultiscale modelingmyosinsarcomere

Identifiers

PMID39172779
PMCPMC11363293

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.