Evidence map›Paper›PMID 39171371›Full record

ArticleJournal of experimental botany2024

Primary multistep phosphorelay activation comprises both cytokinin and abiotic stress responses: insights from comparative analysis of Brassica type-A response regulators.

Katrina Leslie Nicolas Mala, Jan Skalak, Elena Zemlyanskaya, Vladislav Dolgikh, Veronika Jedlickova, Helene S Robert, Lenka Havlickova, Klara Panzarova, Martin Trtilek, Ian Bancroft and 1 more

Abstract read
In one paragraph

Article in Journal of experimental botany, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Katrina Leslie Nicolas MalaCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A2, 625 00 Brno, Czech Republic.ORCID 0000-0002-5365-0758
Jan SkalakCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A2, 625 00 Brno, Czech Republic.ORCID 0000-0002-0784-499X
Elena ZemlyanskayaInstitute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia.ORCID 0009-0005-7316-7690
Vladislav DolgikhInstitute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090, Russia.ORCID 0009-0009-2975-8329
Veronika JedlickovaCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A2, 625 00 Brno, Czech Republic.
Helene S RobertCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A2, 625 00 Brno, Czech Republic.ORCID 0000-0002-6610-836X
Lenka HavlickovaDepartment of Biology, University of York, York, UK.ORCID 0000-0002-5874-8615
Klara PanzarovaPSI (Photon Systems Instruments), Ltd, Drásov, 66424 Drásov, Czech Republic.ORCID 0000-0001-7519-5162
Martin TrtilekPSI (Photon Systems Instruments), Ltd, Drásov, 66424 Drásov, Czech Republic.ORCID 0000-0002-6294-052X
Ian BancroftDepartment of Biology, University of York, York, UK.ORCID 0000-0001-7707-1171
Jan HejatkoCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A2, 625 00 Brno, Czech Republic.ORCID 0000-0002-2622-6046

Funding

Ministry of EducationRussian State Budgetary Project FWNR-2022-0006TowArds Next GENeration Crops CZ.02.01.01/00/22_008/0004581Youth and Sports of the Czech Republic
6 · The paper itself

Abstract

Multistep phosphorelay (MSP) signaling integrates hormonal and environmental signals to control both plant development and adaptive responses. Type-A RESPONSE REGULATOR (RRA) genes, the downstream members of the MSP cascade and cytokinin primary response genes, are thought to mediate primarily the negative feedback regulation of (cytokinin-induced) MSP signaling. However, transcriptional data also suggest the involvement of RRA genes in stress-related responses. By employing evolutionary conservation with the well-characterized Arabidopsis thaliana RRA genes, we identified five and 38 novel putative RRA genes in Brassica oleracea and Brassica napus, respectively. Our phylogenetic analysis suggests the existence of gene-specific selective pressure, maintaining the homologs of ARR3, ARR6, and ARR16 as singletons during the evolution of Brassicaceae. We categorized RRA genes based on the kinetics of their cytokinin-mediated up-regulation and observed both similarities and specificities in this type of response across Brassicaceae species. Using bioinformatic analysis and experimental data demonstrating the cytokinin and abiotic stress responsiveness of the A. thaliana-derived TCSv2 reporter, we unveil the mechanistic conservation of cytokinin- and stress-mediated up-regulation of RRA genes in B. rapa and B. napus. Notably, we identify partial cytokinin dependency of cold stress-induced RRA transcription, thus further demonstrating the role of cytokinin signaling in crop adaptive responses.

Indexed as

BrassicaCytokininsPlant ProteinsStress, PhysiologicalArabidopsisBrassica napusGene Expression Regulation, PlantPhylogenyPlant Growth RegulatorsSignal TransductionCytokininsPlant Growth RegulatorsPlant ProteinsArabidopsis thalianaBrassica napusBrassica oleraceaBrassica rapacytokininsmultistep phosphorelayosmotic stresssalinitytwo-component signalingtype-A response regulator

Identifiers

PMID39171371
PMCPMC11523033

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.