Evidence map›Paper›PMID 39167708›Full record

ArticleBioconjugate chemistry2024

A Novel Confocal Scanning Protein-Protein Interaction Assay (PPI-CONA) Reveals Exceptional Selectivity and Specificity of CC0651, a Small Molecule Binding Enhancer of the Weak Interaction between the E2 Ubiquitin-Conjugating Enzyme CDC34A and Ubiquitin.

Joanna Koszela, Nhan T Pham, Steven Shave, Daniel St-Cyr, Derek F Ceccarelli, Steven Orlicky, Anne Marinier, Frank Sicheri, Mike Tyers, Manfred Auer

Abstract read
In one paragraph

Article in Bioconjugate chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Joanna KoszelaSchool of Molecular Biosciences, University of Glasgow, Glasgow G12 8QQ, U.K.ORCID 0000-0002-8606-5379
Nhan T PhamSchool of Biological Sciences, University of Edinburgh, Edinburgh, Scotland EH9 3BF, U.K.ORCID 0000-0003-1620-2910
Steven ShaveSchool of Biological Sciences, University of Edinburgh, Edinburgh, Scotland EH9 3BF, U.K.ORCID 0000-0001-6996-3663
Daniel St-CyrX-Chem Inc., Montréal, Québec H4S 1Z9, Canada.ORCID 0000-0003-2432-6585
Derek F CeccarelliCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.
Steven OrlickyCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.
Anne MarinierInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.
Frank SicheriCentre for Systems Biology, Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.ORCID 0000-0002-9824-2117
Mike TyersInstitute for Research in Immunology and Cancer, University of Montreal, Montreal, Québec H3T 1J4, Canada.
Manfred AuerSchool of Biological Sciences, University of Edinburgh, Edinburgh, Scotland EH9 3BF, U.K.ORCID 0000-0001-8920-3522

Funding

Wellcome Trust
6 · The paper itself

Abstract

Protein-protein interactions (PPIs) are some of the most challenging target classes in drug discovery. Highly sensitive detection techniques are required for the identification of chemical modulators of PPIs. Here, we introduce PPI confocal nanoscanning (PPI-CONA), a miniaturized, microbead based high-resolution fluorescence imaging assay. We demonstrate the capabilities of PPI-CONA by detecting low affinity ternary complex formation between the human CDC34A ubiquitin-conjugating (E2) enzyme, ubiquitin, and CC0651, a small molecule enhancer of the CDC34A-ubiquitin interaction. We further exemplify PPI-CONA with an E2 enzyme binding study on CC0651 and a CDC34A binding specificity study of a series of CC0651 analogues. Our results indicate that CC0651 is highly selective toward CDC34A. We further demonstrate how PPI-CONA can be applied to screening very low affinity interactions. PPI-CONA holds potential for high-throughput screening for modulators of PPI targets and characterization of their affinity, specificity, and selectivity.

Indexed as

Protein BindingUbiquitinUbiquitin-Conjugating EnzymesAnaphase-Promoting Complex-CyclosomeHumansMicroscopy, ConfocalProtein Interaction MappingAnaphase-Promoting Complex-CyclosomeCDC34 protein, humanUbiquitinUbiquitin-Conjugating Enzymes

Identifiers

PMID39167708
PMCPMC11417995

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.