Evidence map›Paper›PMID 39166875›Full record

ArticlemSystems2024

Pangenomic landscapes shape performances of a synthetic genetic circuit across

Dennis Tin Chat Chan, Hans C Bernstein

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Dennis Tin Chat ChanFaculty of Biosciences, Fisheries and Economics, UiT - The Arctic University of Norway, Tromsø, Norway.ORCID 0000-0002-0841-5898
Hans C BernsteinFaculty of Biosciences, Fisheries and Economics, UiT - The Arctic University of Norway, Tromsø, Norway.ORCID 0000-0003-2913-7708

Funding

ABSORB - Arctic carbon storage from biomes
6 · The paper itself

Abstract

Engineering identical genetic circuits into different species typically results in large differences in performance due to the unique cellular environmental context of each host, a phenomenon known as the "chassis-effect" or "context-dependency". A better understanding of how genomic and physiological contexts underpin the chassis-effect will improve biodesign strategies across diverse microorganisms. Here, we combined a pangenomic-based gene expression analysis with quantitative measurements of performance from an engineered genetic inverter device to uncover how genome structure and function relate to the observed chassis-effect across six closely related

Indexed as

Genome, BacterialGene Expression Regulation, BacterialGene Regulatory NetworksGenetic EngineeringGenomicsMultigene FamilyPseudomonas stutzeriSynthetic Biologybiodesignbroad-host-rangechassis-effectcontext dependencegenetic inverterhost-circuit interactionsnon-model organismprocrustean superimpositionsynthetic biologytranscriptomics

Identifiers

PMID39166875
PMCPMC11406997

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.