Evidence map›Paper›PMID 39166497›Full record

ArticleNucleic acids research2024

Structural basis for difunctional mechanism of m-AMSA against African swine fever virus pP1192R.

Ruili Liu, Junqing Sun, Lian-Feng Li, Yingxian Cheng, Meilin Li, Lifeng Fu, Su Li, Guorui Peng, Yanjin Wang, Sheng Liu and 9 more

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Ruili LiuCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province 450046, China.
Junqing SunCollege of Veterinary Medicine, Shanxi Agricultural University, Jinzhong, Shanxi Province 030801, China.
Lian-Feng LiState Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High-Containment Facilities for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin Province 150069, China.
Yingxian ChengCollege of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan Province 450046, China.
Meilin LiState Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High-Containment Facilities for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin Province 150069, China.
Lifeng FuCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Su LiState Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High-Containment Facilities for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin Province 150069, China.ORCID 0000-0002-5845-4617
Guorui PengChina/WOAH Reference Laboratory for Classical Swine Fever, China Institute of Veterinary Drug Control, Beijing 100081, China.
Yanjin WangState Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High-Containment Facilities for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin Province 150069, China.
Sheng LiuSUSTech Cryo-EM Centre, Southern University of Science and Technology, Shenzhen 518055, China.
Xiao QuCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Jiaqi RanDepartment of Biological Sciences, School of life Science, Liaoning University, Shenyang, Liaoning Province 110030, China.
Xiaomei LiShanxi Academy of Advanced Research and Innovation, Taiyuan, Shanxi Province 030032, China.
Erqi PangShanxi Academy of Advanced Research and Innovation, Taiyuan, Shanxi Province 030032, China.
Hua-Ji QiuState Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High-Containment Facilities for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin Province 150069, China.
Yanli WangNational Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-5969-1745
Jianxun QiCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Han WangDepartment of Biomedical Engineering, College of Future Technology, Peking University, Beijing 100091, China.ORCID 0000-0003-0865-8651
George Fu GaoCAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0002-3869-615X

Funding

Fundamental Research Funds for the Central Universities 7100604396National Key Research and Development Program of China 2021YFC2300701National Natural Science Foundation of China 32270157
6 · The paper itself

Abstract

The African swine fever virus (ASFV) type II topoisomerase (Topo II), pP1192R, is the only known Topo II expressed by mammalian viruses and is essential for ASFV replication in the host cytoplasm. Herein, we report the structures of pP1192R in various enzymatic stages using both X-ray crystallography and single-particle cryo-electron microscopy. Our data structurally define the pP1192R-modulated DNA topology changes. By presenting the A2+-like metal ion at the pre-cleavage site, the pP1192R-DNA-m-AMSA complex structure provides support for the classical two-metal mechanism in Topo II-mediated DNA cleavage and a better explanation for nucleophile formation. The unique inhibitor selectivity of pP1192R and the difunctional mechanism of pP1192R inhibition by m-AMSA highlight the specificity of viral Topo II in the poison binding site. Altogether, this study provides the information applicable to the development of a pP1192R-targeting anti-ASFV strategy.

Indexed as

African Swine Fever VirusCryoelectron MicroscopyDNA Topoisomerases, Type IIAnimalsAntiviral AgentsBinding SitesCrystallography, X-RayModels, MolecularSwineViral ProteinsAntiviral AgentsDNA Topoisomerases, Type IIViral Proteins

Identifiers

PMID39166497
PMCPMC11472052

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.