Evidence map›Paper›PMID 39165674›Full record

ArticleBiophysicist (Rockville, Md.)2024

Using Histologic Image Analysis to Understand Biophysical Regulations of Epithelial Cell Morphology.

Alexandra Bermudez, Samanta Negrete Muñoz, Rita Blaik, Amy C Rowat, Jimmy Hu, Neil Y C Lin

Abstract read
In one paragraph

Article in Biophysicist (Rockville, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Alexandra BermudezBioengineering Department, University of California, Los Angeles, Los Angeles, CA, USA.
Samanta Negrete MuñozBioengineering Department, University of California, Los Angeles, Los Angeles, CA, USA.
Rita BlaikCalifornia NanoSystems Institute, University of California, Los Angeles, Los Angeles, CA, USA.
Amy C RowatBioengineering Department, University of California, Los Angeles, Los Angeles, CA, USA.
Jimmy HuBroad Stem Cell Center, University of California, Los Angeles, Los Angeles, CA, USA.
Neil Y C LinBioengineering Department, University of California, Los Angeles, Los Angeles, CA, USA.

Funding

AI-Informed Signaling Factor Design for In Vitro Rejuvenating Mesenchymal Stromal CellsR35GM146735 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Neil Lin · 2022 to 2026
$2.3M
Mechanical regulation of transcription in dental epithelial stem cells through cell packing and tissue forcesR01DE030471 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Jimmy Kuang-Hsien Hu · 2022 to 2026
$1.8M
NIDCR NIH HHS R01 DE030471NIGMS NIH HHS R35 GM146735
6 · The paper itself

Abstract

Epithelial mechanics and mechanobiology have become 2 important research fields in life sciences and bioengineering. These fields investigate how physical factors induced by cell adhesion and collective behaviors can directly regulate biologic processes, such as organ development and disease progression. Cell mechanics and mechanobiology thus make exciting biophysics education topics to illustrate how fundamental physics principles play a role in regulating cell biology. However, the field currently lacks hands-on activities that engage students in learning science and outreach programs in these topics. One such area is the development of robust hands-on modules that allow students to observe features of cell shape and mechanics and connect them to fundamental physics principles. Here, we demonstrate a workflow that engages students in studying epithelial cell mechanics by using commercial histology slides of frog skin. We show that by using recently developed artificial intelligence-based image-segmentation tools, students can easily quantify different cell morphologic features in a high-throughput manner. Using our workflow, students can reproduce 2 essential findings in cell mechanics: the common gamma distribution of normalized cell aspect ratio in jammed epithelia and the constant ratio between the nuclear and cellular area. Importantly, because the only required instrument for this active learning module is a readily available light microscope and a computer, our module is relatively low cost, as well as portable. These features make the module scalable for students at various education levels and outreach programs. This highly accessible education module provides a fun and engaging way to introduce students to the world of epithelial tissue mechanics.

Indexed as

first-year undergraduatehands-on learninghigh/middle school laboratoriesinterdisciplinary

Identifiers

PMID39165674
PMCPMC11335341

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.