Evidence map›Paper›PMID 39164525›Full record

ArticleNature structural & molecular biology2024

Differential dynamics specify MeCP2 function at nucleosomes and methylated DNA.

Gabriella N L Chua, John W Watters, Paul Dominic B Olinares, Masuda Begum, Lauren E Vostal, Joshua A Luo, Brian T Chait, Shixin Liu

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Gabriella N L ChuaLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
John W WattersLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0001-5786-8861
Paul Dominic B OlinaresLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, NY, USA.
Masuda BegumLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
Lauren E VostalTri-Institutional PhD Program in Chemical Biology, New York, NY, USA.ORCID http://orcid.org/0000-0001-9128-7489
Joshua A LuoLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
Brian T ChaitLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0003-3524-557X
Shixin LiuLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA. shixinliu@rockefeller.edu.ORCID http://orcid.org/0000-0003-4238-7066

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
Genetics and Cell BiologyT32GM066699 · NIGMS · ROCKEFELLER UNIVERSITY · PI STRICKLAND, SIDNEY · 2004 to 2021
$7.6M
Probing Symmetry Breaking in Epigenetic Inheritance: From Single Molecules to Systems BiologyDP2HG010510 · NHGRI · ROCKEFELLER UNIVERSITY · PI LIU, SHIXIN · 2018 to 2018
$2.5M
Tri-Institutional PhD Program in Chemical BiologyT32GM136640 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI DEREK S TAN · 2020 to 2026
$2.4M
Biophysical Determinants of the Nucleosome as an Activity Center for Chromatin RegulatorsR01GM149862 · NIGMS · ROCKEFELLER UNIVERSITY · PI Shixin Liu · 2023 to 2026
$1.4M
Tri-Institutional PhD Program in Chemical BiologyT32GM115327 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI TAN, DEREK S · 2015 to 2019
$741k
Single-molecule Investigation of the Interaction Between MeCP2 and ChromatinF31MH132306 · NIMH · ROCKEFELLER UNIVERSITY · PI CHUA, GABRIELLA N. L. · 2022 to 2024
$143k
NHGRI NIH HHS DP2 HG010510NIGMS NIH HHS P41 GM103314NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM149862NIGMS NIH HHS T32 GM066699NIGMS NIH HHS T32 GM115327NIGMS NIH HHS T32 GM136640NIMH NIH HHS F31 MH132306
6 · The paper itself

Abstract

Methyl-CpG-binding protein 2 (MeCP2) is an essential chromatin-binding protein whose mutations cause Rett syndrome (RTT), a severe neurological disorder that primarily affects young females. The canonical view of MeCP2 as a DNA methylation-dependent transcriptional repressor has proven insufficient to describe its dynamic interaction with chromatin and multifaceted roles in genome organization and gene expression. Here we used single-molecule correlative force and fluorescence microscopy to directly visualize the dynamics of wild-type and RTT-causing mutant MeCP2 on DNA. We discovered that MeCP2 exhibits distinct one-dimensional diffusion kinetics when bound to unmethylated versus CpG methylated DNA, enabling methylation-specific activities such as co-repressor recruitment. We further found that, on chromatinized DNA, MeCP2 preferentially localizes to nucleosomes and stabilizes them from mechanical perturbation. Our results reveal the multimodal behavior of MeCP2 on chromatin that underlies its DNA methylation- and nucleosome-dependent functions and provide a biophysical framework for dissecting the molecular pathology of RTT mutations.

Indexed as

DNADNA MethylationMethyl-CpG-Binding Protein 2NucleosomesRett SyndromeAnimalsChromatinCpG IslandsHumansMiceMutationProtein BindingSingle Molecule ImagingChromatinDNAMECP2 protein, humanMecp2 protein, mouseMethyl-CpG-Binding Protein 2Nucleosomes

Identifiers

PMID39164525
PMCPMC11564119

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.