Evidence map›Paper›PMID 39164471›Full record

ArticleEMBO molecular medicine2024

Ultra-sensitive molecular residual disease detection through whole genome sequencing with single-read error correction.

Xinxing Li, Tao Liu, Antonella Bacchiocchi, Mengxing Li, Wen Cheng, Tobias Wittkop, Fernando L Mendez, Yingyu Wang, Paul Tang, Qianqian Yao and 8 more

Abstract read
In one paragraph

Article in EMBO molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Xinxing Li *Department of Gastrointestinal Surgery, Tongji Hospital, Tongji University School of Medicine, Shanghai, 200065, P. R. China.ORCID http://orcid.org/0009-0007-9586-327X
Tao Liu *Department of Thoracic Surgery, Peking University First Hospital, Beijing, 100034, China.
Antonella Bacchiocchi *Department of Dermatology, Yale University School of Medicine, New Haven, CT, USA.
Mengxing Li *Department of Thoracic Surgery, Shanghai Changhai Hospital, Second Military Medical University, Shanghai, 200433, China.
Wen ChengDepartment of Thoracic Surgery, Shanghai Changhai Hospital, Second Military Medical University, Shanghai, 200433, China.ORCID http://orcid.org/0000-0001-9587-3813
Tobias WittkopDepartment of Research and Development, AccuraGen Inc, San Jose, CA, 95134, USA.
Fernando L MendezDepartment of Research and Development, AccuraGen Inc, San Jose, CA, 95134, USA.ORCID http://orcid.org/0000-0002-0879-3813
Yingyu WangDepartment of Research and Development, AccuraGen Inc, San Jose, CA, 95134, USA.ORCID http://orcid.org/0000-0002-6662-4321
Paul TangDepartment of Research and Development, AccuraGen Inc, San Jose, CA, 95134, USA.
Qianqian YaoDepartment of Medical Science, Shanghai YunSheng Medical Laboratory Co., Ltd, Shanghai, 200437, China.ORCID http://orcid.org/0000-0003-2349-9994
Marcus W BosenbergDepartment of Dermatology, Yale University School of Medicine, New Haven, CT, USA.
Mario SznolYale Cancer Center, Yale School of Medicine, New Haven, CT, USA.
Qin YanYale Cancer Center, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-4077-453X
Malek FahamDepartment of Research and Development, AccuraGen Inc, San Jose, CA, 95134, USA.
Li WengDepartment of Research and Development, AccuraGen Inc, San Jose, CA, 95134, USA. lweng@accuragen.com.ORCID http://orcid.org/0009-0000-6080-7488
Ruth HalabanDepartment of Dermatology, Yale University School of Medicine, New Haven, CT, USA. ruth.halaban@yale.edu.ORCID http://orcid.org/0000-0001-8451-1964
Hai JinDepartment of Thoracic Surgery, Shanghai Changhai Hospital, Second Military Medical University, Shanghai, 200433, China. jinhai@smmu.edu.cn.ORCID http://orcid.org/0000-0003-0430-2834
Zhiqian HuDepartment of Gastrointestinal Surgery, Tongji Hospital, Tongji University School of Medicine, Shanghai, 200065, P. R. China. 2105203@tongji.edu.cn.ORCID http://orcid.org/0000-0002-3973-6280

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI MARCUS W BOSENBERG, Harriet M. Kluger · 2006 to 2026
$43.9M
HHS | National Institutes of Health (NIH) NCI P50CA121974NCATS NIH HHS UL1 TR001863NCI NIH HHS P50 CA121974Shanghai Natural Science Foundation 21ZR1458200Tongji Hospital (TJH) 2021Tongji Hospital (TJH) ITJ(ZD)2104
6 · The paper itself

Abstract

While whole genome sequencing (WGS) of cell-free DNA (cfDNA) holds enormous promise for detection of molecular residual disease (MRD), its performance is limited by WGS error rate. Here we introduce AccuScan, an efficient cfDNA WGS technology that enables genome-wide error correction at single read-level, achieving an error rate of 4.2 × 10

Indexed as

Circulating Tumor DNANeoplasm, ResidualWhole Genome SequencingColorectal NeoplasmsEsophageal NeoplasmsHumansMelanomaSensitivity and SpecificityCirculating Tumor DNACirculating Tumor DNAMolecular Residual DiseaseSingle-read Error CorrectionWhite Blood Cell-freeWhole Genome Sequencing

Identifiers

PMID39164471
PMCPMC11393307

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.