Evidence map›Paper›PMID 39164344›Full record

ArticleScientific reports2024

Identification of copper death-associated molecular clusters and immunological profiles for lumbar disc herniation based on the machine learning.

Haipeng Xu, Yaheng Jiang, Ya Wen, Qianqian Liu, Hong-Gen Du, Xin Jin

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haipeng Xu *Department of Tuina, The First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Traditional Chinese Medicine), Hangzhou, 310000, China.
Yaheng Jiang *Department of Tuina, The First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Traditional Chinese Medicine), Hangzhou, 310000, China.
Ya WenDepartment of Tuina, The First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Traditional Chinese Medicine), Hangzhou, 310000, China.
Qianqian LiuRespiratory Department, The First People's Hospital of Lanzhou, Lanzhou, Gansu, China.
Hong-Gen DuDepartment of Tuina, The First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Traditional Chinese Medicine), Hangzhou, 310000, China. 19963024@zcmu.edu.cn.
Xin Jin *Department of Tuina, The First Affiliated Hospital of Zhejiang Chinese Medical University (Zhejiang Provincial Hospital of Traditional Chinese Medicine), Hangzhou, 310000, China. 972775581@qq.com.

Funding

Natural Science Foundation of Zhejiang Province LQ22H270007Natural Science Foundation of Zhejiang Province LQ24H270014Zhejiang Chinese Medicine University 2023 affiliated hospital research project 2023FSYYZQ06Zhejiang Province Traditional Chinese Medicine Science and Technology Project 2022ZB121
6 · The paper itself

Abstract

Lumbar disc herniation (LDH) is a common clinical spinal disorder, yet its etiology remains unclear. We aimed to explore the role of cuproptosis-related genes (CRGs) and identify potential diagnostic biomarkers. Our analysis involved interrogating the GSE124272 and GSE150408 datasets for differential gene expression profiles associated with CRGs and immune characteristics. Molecular clustering was performed on LDH samples, followed by expression and immune infiltration analyses. Using the WGCNA algorithm, specific genes within CRG clusters were identified. After selecting the most predictive genes from the optimal model, four machine learning models were constructed and validated. This study identified nine CRGs associated with copper-regulated cell death. Two copper-containing molecular clusters linked to death were detected in LDH samples. Elevated expression and immune infiltration levels were found in LDH patients, particularly in CRG cluster C2. Utilizing XGB, five genes were identified for constructing a diagnostic model, achieving an area under the curve values of 0.715. In conclusion, this research provides valuable insights into the association between LDH and copper-regulated cell death, alongside proposing a promising predictive model.

Indexed as

CopperIntervertebral Disc DisplacementMachine LearningBiomarkersCell DeathCluster AnalysisGene Expression ProfilingHumansLumbar VertebraeTranscriptomeBiomarkersCopperCopper death-associated molecular clustersImmunological profilesLumbar disc herniationMachine learning

Identifiers

PMID39164344
PMCPMC11336120

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