Evidence map›Paper›PMID 39164251›Full record

ArticleScientific data2024

Datasets of fungal diversity and pseudo-chromosomal genomes of mangrove rhizosphere soil in China.

Jianwei Chen, Ling Peng, Changhao Zhou, Liangwei Li, Qijin Ge, Chengcheng Shi, Wenjie Guo, Tianci Guo, Ling Jiang, Zhidong Zhang and 4 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jianwei Chen *BGI Research, Qingdao, 266555, China.ORCID 0000-0003-2332-4609
Ling Peng *BGI Research, Qingdao, 266555, China.
Changhao Zhou *BGI Research, Qingdao, 266555, China.
Liangwei LiBGI Research, Qingdao, 266555, China.
Qijin GeBGI Research, Qingdao, 266555, China.
Chengcheng ShiBGI Research, Qingdao, 266555, China.
Wenjie GuoBGI Research, Qingdao, 266555, China.
Tianci GuoBGI Research, Qingdao, 266555, China.ORCID 0009-0006-3067-7399
Ling JiangState Key Laboratory of Materials-Oriented Chemical Engineering, Nanjing Tech University, Nanjing, 211816, China.ORCID 0000-0001-6625-5557
Zhidong ZhangXinjiang Key Laboratory of Special Environmental Microbiology, Institute of Applied Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Guangyi FanBGI Research, Qingdao, 266555, China.ORCID 0000-0001-7365-1590
Wenwei ZhangBGI Research, Shenzhen, 518083, China.ORCID 0000-0001-9220-2467
Karsten KristiansenQingdao Key Laboratory of Marine Genomics, and Qingdao-Europe Advanced Institute for Life Sciences, BGI Research, Qingdao, 266555, China. kk@bio.ku.dk.ORCID 0000-0002-6024-0917
Yangyang JiaBGI Research, Shenzhen, 518083, China. jiayangyang@genomics.cn.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32100047National Natural Science Foundation of China (National Science Foundation of China) U2106228
6 · The paper itself

Abstract

With climate change and anthropic influence on the coastal ecosystems, mangrove ecosystems are disappearing at an alarming rate. Accordingly, it becomes important to track, study, record and store the mangrove microbial community considering their ecological importance and potential for biotechnological applications. Here, we provide information on mangrove fungal community composition and diversity in mangrove ecosystems with different plant species and from various locations differing in relation to anthropic influences. We describe twelve newly assembled genomes, including four chromosomal-level genomes of fungal isolates from the mangrove ecosystems coupled with functional annotations. We envisage that these data will be of value for future studies including comparative genome analysis and large-scale temporal and/or spatial research to elucidate the potential mechanisms by which mangrove fungal communities assemble and evolve. We further anticipate that the genomes represent valuable resources for bioprospecting related to industrial or clinical uses.

Indexed as

FungiGenome, FungalRhizosphereSoil MicrobiologyChinaWetlands

Identifiers

PMID39164251
PMCPMC11336097

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.