Evidence map›Paper›PMID 39164244›Full record

ArticleNature communications2024

Structural insights into i-motif DNA structures in sequences from the insulin-linked polymorphic region.

Dilek Guneri, Effrosyni Alexandrou, Kamel El Omari, Zuzana Dvořáková, Rupesh V Chikhale, Daniel T S Pike, Christopher A Waudby, Christopher J Morris, Shozeb Haider, Gary N Parkinson and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Polyamines are i-motif disruptors.Molecular therapy. Nucleic acids · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Predicting Single-Stranded DNA Oligonucleotides 3D Structures: An Open Issue.Computational and structural biotechnology journal · 2026
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. RNA Structure: Past, Future, and Gene Therapy Applications.International journal of molecular sciences · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Dilek Guneri *School of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK.ORCID 0000-0003-0858-1746
Effrosyni Alexandrou *School of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK.
Kamel El OmariDiamond Light Source, Harwell Science and Innovation Campus, Chilton, Didcot, OX11 0DE, UK.ORCID 0000-0003-3506-6045
Zuzana DvořákováInstitute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 00, Brno, Czech Republic.
Rupesh V ChikhaleSchool of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK.
Daniel T S PikeSchool of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK.
Christopher A WaudbySchool of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK.ORCID 0000-0001-7810-3753
Christopher J MorrisSchool of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK. chris.morris@ucl.ac.uk.ORCID 0000-0002-7703-4474
Shozeb HaiderSchool of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK. shozeb.haider@ucl.ac.uk.ORCID 0000-0003-2650-2925
Gary N ParkinsonSchool of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK. gary.parkinson@ucl.ac.uk.ORCID 0000-0002-1865-9685
Zoë A E WallerSchool of Pharmacy, University College London, 29-39 Brunswick Square, London, WC1N 1AX, UK. z.waller@ucl.ac.uk.ORCID 0000-0001-8538-0484

Funding

Diabetes UK 18/0005820European Commission (EC) 692068: BISONWellcome Trust CC1078
6 · The paper itself

Abstract

The insulin-linked polymorphic region is a variable number of tandem repeats region of DNA in the promoter of the insulin gene that regulates transcription of insulin. This region is known to form the alternative DNA structures, i-motifs and G-quadruplexes. Individuals have different sequence variants of tandem repeats and although previous work investigated the effects of some variants on G-quadruplex formation, there is not a clear picture of the relationship between the sequence diversity, the DNA structures formed, and the functional effects on insulin gene expression. Here we show that different sequence variants of the insulin linked polymorphic region form different DNA structures in vitro. Additionally, reporter genes in cellulo indicate that insulin expression may change depending on which DNA structures form. We report the crystal structure and dynamics of an intramolecular i-motif, which reveal sequences within the loop regions forming additional stabilising interactions that are critical to formation of stable i-motif structures. The outcomes of this work reveal the detail in formation of stable i-motif DNA structures, with potential for rational based drug design for compounds to target i-motif DNA.

Indexed as

DNAG-QuadruplexesInsulinPromoter Regions, GeneticAnimalsBase SequenceCrystallography, X-RayGenes, ReporterHumansModels, MolecularNucleic Acid ConformationNucleotide MotifsPolymorphism, GeneticTandem Repeat SequencesDNAInsulin

Identifiers

PMID39164244
PMCPMC11336075

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.