Evidence map›Paper›PMID 39163621›Full record

SynthesisBlood advances2024

Meta-analysis of genome-wide association studies of stable warfarin dose in patients of African ancestry.

Innocent G Asiimwe, Marc Blockman, Larisa H Cavallari, Karen Cohen, Clint Cupido, Collet Dandara, Brittney H Davis, Barry Jacobson, Julie A Johnson, Mohammed Lamorde and 17 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Blood advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Innocent G AsiimweDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom.ORCID 0000-0002-1196-1822
Marc BlockmanDivision of Clinical Pharmacology, Department of Medicine, University of Cape Town, Cape Town, South Africa.ORCID 0000-0001-7240-8812
Larisa H CavallariDepartment of Pharmacotherapy and Translational Research, Center for Pharmacogenomics, University of Florida College of Pharmacy, Gainesville, FL.
Karen CohenDivision of Clinical Pharmacology, Department of Medicine, University of Cape Town, Cape Town, South Africa.
Clint CupidoDivision of Clinical Pharmacology, Department of Medicine, University of Cape Town, Cape Town, South Africa.
Collet DandaraDivision of Human Genetics, Department of Pathology, Pharmacogenomics and Drug Metabolism Research Group, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.ORCID 0000-0002-5925-4895
Brittney H DavisDepartment of Neurology, The University of Alabama at Birmingham, Birmingham, AL.
Barry JacobsonDepartment of Molecular Medicine and Haematology, University of the Witwatersrand, Johannesburg, South Africa.
Julie A JohnsonDivision of Pharmaceutics and Pharmacology, Center for Clinical and Translational Science, College of Medicine, The Ohio State University, Columbus, OH.ORCID 0000-0001-9847-1932
Mohammed LamordeInfectious Diseases Institute, College of Health Sciences, Makerere University, Kampala, Uganda.
Nita A LimdiDepartment of Neurology, The University of Alabama at Birmingham, Birmingham, AL.
Jennie MorganMetro Health Services, Western Cape Department of Health and Wellness, Cape Town, South Africa.ORCID 0000-0002-6391-7815
Johannes P MoutonDivision of Clinical Pharmacology, Department of Medicine, University of Cape Town, Cape Town, South Africa.
Sarudzai MuyamboDepartment of Biological Sciences and Ecology, Faculty of Science, University of Zimbabwe, Harare, Zimbabwe.ORCID 0000-0002-5848-0006
Doreen NakagaayiDepartment of Adult Cardiology, Uganda Heart Institute, Kampala, Uganda.ORCID 0000-0003-4010-9951
Arinao NdadzaDivision of Human Genetics, Department of Pathology, Pharmacogenomics and Drug Metabolism Research Group, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Emmy OkelloDepartment of Adult Cardiology, Uganda Heart Institute, Kampala, Uganda.
Minoli A PereraDepartment of Pharmacology, Center for Pharmacogenomics, Northwestern University, Chicago, IL.ORCID 0000-0002-1146-2791
Elise SchapkaitzDepartment of Molecular Medicine and Hematology, Charlotte Maxeke Johannesburg Academic Hospital National Health Laboratory System Complex and University of Witwatersrand, Johannesburg, South Africa.ORCID 0000-0002-1534-2930
Christine Sekaggya-WiltshireInfectious Diseases Institute, College of Health Sciences, Makerere University, Kampala, Uganda.
Jerome R SemakulaInfectious Diseases Institute, College of Health Sciences, Makerere University, Kampala, Uganda.
Gayle TatzDivision of Clinical Pharmacology, Department of Medicine, University of Cape Town, Cape Town, South Africa.ORCID 0000-0001-5975-3566
Catriona WaittDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom.ORCID 0000-0003-0134-5855
Guang YangDepartment of Pharmacology, Center for Pharmacogenomics, Northwestern University, Chicago, IL.
Eunice J ZhangDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom.ORCID 0000-0003-1813-2207
Andrea L JorgensenDepartment of Health Data Science, Institute of Population Health Sciences, University of Liverpool, Liverpool, United Kingdom.
Munir PirmohamedDepartment of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, United Kingdom.

Funding

Predictors of hemorrhage among patients on direct acting oral anticoagulantsR01HL092173 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LIMDI, NITA A · 2008 to 2023
$10.4M
Patient Oriented Research in Personalized Antithrombotic TherapyK24HL133373 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LIMDI, NITA A · 2016 to 2025
$1.2M
Medical Research CouncilNHLBI NIH HHS K24 HL133373NHLBI NIH HHS R01 HL092173
6 · The paper itself

Abstract

abstractWarfarin dose requirements are highly variable because of clinical and genetic factors. Although genetic variants influencing warfarin dose have been identified in European and East Asian populations, more work is needed to identify African-specific genetic variants to help optimize warfarin dosing. We performed genome-wide association studies (GWASs) in 4 African cohorts from Uganda, South Africa, and Zimbabwe, totaling 989 warfarin-treated participants who reached stable dose and had international normalized ratios within therapeutic ranges. We also included 2 African American cohorts recruited by the International Warfarin Pharmacogenetics Consortium (n = 316) and the University of Alabama at Birmingham (n = 199). After the GWAS, we performed standard error-weighted meta-analyses and then conducted stepwise conditional analyses to account for known loci in chromosomes 10 and 16. The genome-wide significance threshold was set at P < 5 × 10-8. The meta-analysis, comprising 1504 participants, identified 242 significant SNPs across 3 genomic loci, with 99.6% of these located within known loci on chromosomes 10 (top SNP: rs58800757, P = 4.27 × 10-13) and 16 (top SNP: rs9925964, P = 9.97 × 10-16). Adjustment for the VKORC1 SNP -1639G>A revealed an additional locus on chromosome 2 (top SNPs rs116057875/rs115254730/rs115240773, P = 3.64 × 10-8), implicating the MALL gene, that could indirectly influence warfarin response through interactions with caveolin-1. In conclusion, we reaffirmed the importance of CYP2C9 and VKORC1 in influencing warfarin dose requirements, and identified a new locus (MALL), that still requires direct evidence of biological plausibility.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideWarfarinAnticoagulantsBlack PeopleFemaleHumansMaleVitamin K Epoxide ReductasesAnticoagulantsVitamin K Epoxide ReductasesVKORC1 protein, humanWarfarin

Identifiers

PMID39163621
PMCPMC11493193

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.