Evidence map›Paper›PMID 39159366›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system.

Kevin B Reed, Wantae Kim, Hongyuan Lu, Clayton T Larue, Shirley Guo, Sierra M Brooks, Michael R Montez, James M Wagner, Y Jessie Zhang, Hal S Alper

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Glycosylation of glyphosate drives residue reduction and herbicide tolerance in rice.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kevin B ReedMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Wantae KimMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Hongyuan LuMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Clayton T LarueCrop Science Division, Bayer, Chesterfield, MO 63017.
Shirley GuoCrop Science Division, Bayer, Chesterfield, MO 63017.ORCID 0009-0008-5501-8108
Sierra M BrooksMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
Michael R MontezMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.
James M WagnerMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.ORCID 0009-0002-7258-2612
Y Jessie ZhangDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712.ORCID 0000-0002-9360-5388
Hal S AlperMcKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.ORCID 0000-0002-8246-8605

Funding

Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Deciphering the phosphorylation pattern of RNA polymerase II for eukaryotic transcriptionR35GM148356 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Yan Jessie Zhang · 2023 to 2026
$2.3M
Bayer Crop Science UTA17-001230HHS | NIH (NIH) GM104896NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R35 GM148356
6 · The paper itself

Abstract

The enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) functions in the shikimate pathway which is responsible for the production of aromatic amino acids and precursors of other essential secondary metabolites in all plant species. EPSPS is also the molecular target of the herbicide glyphosate. While some plant EPSPS variants have been characterized with reduced glyphosate sensitivity and have been used in biotechnology, the glyphosate insensitivity typically comes with a cost to catalytic efficiency. Thus, there exists a need to generate additional EPSPS variants that maintain both high catalytic efficiency and high glyphosate tolerance. Here, we create a synthetic yeast system to rapidly study and evolve heterologous EPSP synthases for these dual traits. Using known EPSPS variants, we first validate that our synthetic yeast system is capable of recapitulating growth characteristics observed in plants grown in varying levels of glyphosate. Next, we demonstrate that variants from mutagenesis libraries with distinct phenotypic traits can be isolated depending on the selection criteria applied. By applying strong dual-trait selection pressure, we identify a notable EPSPS mutant after just a single round of evolution that displays robust glyphosate tolerance (K

Indexed as

3-Phosphoshikimate 1-CarboxyvinyltransferaseGlycineGlyphosateSaccharomyces cerevisiaeHerbicide ResistanceHerbicidesPlant Proteins3-Phosphoshikimate 1-CarboxyvinyltransferaseGlycineGlyphosateHerbicidesPlant Proteinsdirected evolutionEPSPSglyphosatesynthetic biologyyeast

Identifiers

PMID39159366
PMCPMC11363307

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.