Evidence map›Paper›PMID 39158947›Full record

ArticleeLife2024

Fam49b dampens TCR signal strength to regulate survival of positively selected thymocytes and peripheral T cells.

Chan-Su Park, Jian Guan, Peter Rhee, Federico Gonzalez, Hee-Sung Lee, Ji-Hyun Park, Laurent Coscoy, Ellen A Robey, Nilabh Shastri, Scheherazade Sadegh-Nasseri

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chan-Su ParkDepartment of Pathology, The Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0003-4968-8304
Jian GuanDepartment of Pathology, The Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0002-0118-6578
Peter RheeDepartment of Pathology, The Johns Hopkins University School of Medicine, Baltimore, United States.
Federico GonzalezDepartment of Nutritional Sciences and Toxicology, University of California,Berkeley, Berkeley, United States.
Hee-Sung LeeDepartment of Pharmaceutics, College of Pharmacy, Chungbuk National University, Cheongju, Republic of Korea.
Ji-Hyun ParkDepartment of Pharmaceutics, College of Pharmacy, Chungbuk National University, Cheongju, Republic of Korea.
Laurent CoscoyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID https://orcid.org/0000-0002-7337-2345
Ellen A RobeyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.ORCID https://orcid.org/0000-0002-3630-5266
Nilabh ShastriDepartment of Pathology, The Johns Hopkins University School of Medicine, Baltimore, United States.ORCID https://orcid.org/0000-0002-8060-3025
Scheherazade Sadegh-NasseriDepartment of Pathology, The Johns Hopkins University School of Medicine, Baltimore, United States.

Funding

Antigen Processing in the Secretory PathwayR37AI060040 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SADEGH-NASSERI, SCHEHERAZADE · 2012 to 2021
$4.2M
Immune Surveillance of Antigen Processing PathwayR01AI130210 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SADEGH-NASSERI, SCHEHERAZADE · 2017 to 2021
$2.8M
Unconventional Sources of Peptides for Antigen PresentationR01AI121174 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SADEGH-NASSERI, SCHEHERAZADE · 2017 to 2022
$2.7M
Ministry of Science and ICT, South Korea MRC-2017R1A5A2015541Ministry of Science and ICT, South Korea RS-2023-00212022NIAID NIH HHS R01 AI121174NIAID NIH HHS R01 AI130210NIAID NIH HHS R37 AI060040NIH HHS R01AI121174NIH HHS R01AI130210NIH HHS R37AI060040
6 · The paper itself

Abstract

The fate of developing T cells is determined by the strength of T cell receptor (TCR) signal they receive in the thymus. This process is finely regulated through the tuning of positive and negative regulators in thymocytes. The Family with sequence similarity 49 member B (Fam49b) protein is a newly discovered negative regulator of TCR signaling that has been shown to suppress Rac-1 activity in vitro in cultured T cell lines. However, the contribution of Fam49b to the thymic development of T cells is unknown. To investigate this important issue, we generated a novel mouse line deficient in Fam49b (Fam49b-KO). We observed that Fam49b-KO double positive (DP) thymocytes underwent excessive negative selection, whereas the positive selection stage was unaffected. Fam49b deficiency impaired the survival of single positive thymocytes and peripheral T cells. This altered development process resulted in significant reductions in CD4 and CD8 single-positive thymocytes as well as peripheral T cells. Interestingly, a large proportion of the TCRγδ

Indexed as

Receptors, Antigen, T-CellSignal TransductionThymocytesAnimalsCell SurvivalMiceMice, KnockoutT-LymphocytesReceptors, Antigen, T-Cellcytoskeleton remodelingFam49bimmunologyinflammationintraepithelial T cellsmousenegative selectionRacT cell development

Identifiers

PMID39158947
PMCPMC11333044

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.