Evidence map›Paper›PMID 39158216›Full record

ReviewJournal of clinical laboratory analysis2024

Application of Second-Generation Sequencing Technology in Lower Respiratory Tract Infection.

Chong Wang, Shuo Yang, Qi Liu, Hongchao Liu, Shangjia Jin, Jiajia Zheng, Xiumei Xiao, Xin Hou, Jing Li, Sisi Ma and 1 more

Abstract readReview
In one paragraph

Review in Journal of clinical laboratory analysis, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chong WangDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.ORCID https://orcid.org/0000-0002-6299-9759
Shuo YangDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.ORCID https://orcid.org/0000-0001-6894-0793
Qi LiuDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Hongchao LiuDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Shangjia JinDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Jiajia ZhengDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Xiumei XiaoDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Xin HouDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Jing LiDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Sisi MaDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.
Liyan CuiDepartment of Laboratory Medicine, Peking University Third Hospital, Beijing, China.ORCID https://orcid.org/0000-0003-1870-3997

Funding

Hospital-Enterprise Joint Funding ProjectKey Clinical Specialty Funding Project of Beijing
6 · The paper itself

Abstract

backgroundLower respiratory tract infection (LRTI) has long been an important threat to people's life and health, so the rapid diagnosis of LRTI is of great significance in clinical treatment. In recent years, the development of the sequencing technology provides a new direction for the rapid diagnosis of LRTI. In this review, the advantages and disadvantages of second-generation sequencing techniques represented by metagenomics next-generation sequencing (mNGS) and droplet digital polymerase chain reaction (ddPCR) in LRTI were reviewed. Furthermore, it offers insights into the future trajectory of this technology, highlighting its potential to revolutionise the field of respiratory infection diagnostics.

objectiveThis review summarises developments in mechanistic research of second-generation sequencing technology their relationship with clinical practice, providing insights for future research.

methodsAuthors conducted a search on PubMed and Web of Science using the professional terms 'Lower respiratory tract infection' and 'droplet digital polymerase chain reaction' and 'metagenomics next generation sequencing'. The obtained literature was then roughly categorised based on their research content. Similar studies were grouped into the same sections, and further searches were conducted based on the keywords of each section.

resultsDifferent studies discussed the application of second-generation sequencing technology in LRTI from different angles, including the detection of pathogens of LRTI by mNGS and ddPCR, the prediction ability of drug-resistant bacteria, and comparison with traditional methods. We try to analyse the advantages and disadvantages of the second-generation sequencing technology by combing the research results of mNGS and ddPCR. In addition, the development direction of the second-generation sequencing technology is prospected.

Indexed as

High-Throughput Nucleotide SequencingMetagenomicsRespiratory Tract InfectionsHumansPolymerase Chain Reactiondroplet digital polymerase chain reactionlower respiratory tract infectionmetagenomics next‐generation sequencingpathogen analysisprediction of drug resistance

Identifiers

PMID39158216
PMCPMC11492342

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.