Evidence map›Paper›PMID 39157599›Full record

ArticleEJHaem2024

Analysis of B-cell receptor repertoire to evaluate immunogenicity of monovalent Omicron XBB.1.5 mRNA vaccines.

Yohei Funakoshi, Kimikazu Yakushijin, Goh Ohji, Takaji Matsutani, Kazuhiko Doi, Hironori Sakai, Tomoki Sasaki, Takahiro Kusakabe, Sakuya Matsumoto, Yasuyuki Saito and 10 more

Abstract read
In one paragraph

Article in EJHaem, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yohei FunakoshiDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.ORCID https://orcid.org/0000-0001-7793-5013
Kimikazu YakushijinDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.ORCID https://orcid.org/0000-0003-2511-7857
Goh OhjiDepartment of Microbiology and Infectious Diseases Division of Infection Disease Therapeutics Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Takaji MatsutaniResearch & Development Department Repertoire Genesis Inc Ibaraki Japan.
Kazuhiko DoiR&D Cellspect Co., Ltd Morioka Japan.
Hironori SakaiR&D Cellspect Co., Ltd Morioka Japan.
Tomoki SasakiR&D Department KAICO Ltd Fukuoka Japan.
Takahiro KusakabeLaboratory of Insect Genome Science Graduate School of Bioresource and Bioenvironmental Sciences Kyushu University Fukuoka Japan.
Sakuya MatsumotoDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Yasuyuki SaitoDivision of Molecular and Cellular Signaling Kobe University Graduate School of Medicine Kobe Japan.
Shinichiro KawamotoDepartment of Transfusion Medicine and Cell Therapy Kobe University Hospital Kobe Japan.
Katsuya YamamotoDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Taiji KoyamaDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Yoshiaki NagataniDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Keiji KurataDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Shiro KimbaraDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Yoshinori ImamuraDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Naomi KiyotaDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.
Mitsuhiro ItoDivision of Medical Biophysics Kobe University Graduate School of Health Sciences Kobe Japan.
Hironobu MinamiDepartment of Medicine Division of Medical Oncology/Hematology Kobe University Hospital and Graduate School of Medicine Kobe Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Monovalent Omicron XBB.1.5 mRNA vaccines were newly developed and approved by the FDA in Autumn 2023 for preventing COVID-19. However, clinical efficacy for these vaccines is currently lacking. We previously established the quantification of antigen-specific antibody sequence (QASAS) method to assess the response to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) vaccination at the mRNA level using B-cell receptor (BCR) repertoire assay and the coronavirus antibody database (CoV-AbDab). Here, we used this method to evaluate the immunogenicity of monovalent XBB.1.5 vaccines. We analyzed repeated blood samples of healthy volunteers before and after monovalent XBB.1.5 vaccination (BNT162b2 XBB.1.5 or mRNA-1273.815) for the BCR repertoire to assess BCR/antibody sequences that matched SARS-CoV-2-specific sequences in the database. The number of matched unique sequences and their total reads quickly increased 1 week after vaccination. Matched sequences included those bound to the Omicron strain and Omicron XBB sublineage. The antibody sequences that can bind to the Omicron strain and XBB sublineage revealed that the monovalent XBB.1.5 vaccines showed a stronger response than previous vaccines or SARS-CoV-2 infection before the emergence of XBB sublineage. The QASAS method was able to demonstrate the immunogenic effect of monovalent XBB.1.5 vaccines for the 2023-2024 COVID-19 vaccination campaign.

Indexed as

B‐cell receptor repertoirecoronavirus antibody databasemonovalent Omicron XBB.1.5 mRNA vaccinationquantification of antigen‐specific antibody sequence

Identifiers

PMID39157599
PMCPMC11327733

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.