Evidence map›Paper›PMID 39154317›Full record

ArticleDiscover oncology2024

A comprehensive analysis of TRP-related gene signature, and immune infiltration in patients with colorectal cancer.

Yicheng Liu, Xiaobing Yao, Wenjun Zhao, Jin Xu, Haiyan Zhang, Ting Huang, Chuang Wu, Jiajia Yang, Cheng Tang, Qianqian Ye and 2 more

Abstract read
In one paragraph

Article in Discover oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yicheng Liu *Department of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Xiaobing Yao *Gastrointestinal surgery, Yueyang hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Wenjun Zhao *Department of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Jin XuDepartment of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Haiyan ZhangDepartment of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Ting HuangDepartment of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Chuang WuDepartment of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Jiajia YangDepartment of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Cheng TangDepartment of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China.
Qianqian YeDepartment of Anorectal Surgery, Shuguang Hospital, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Weiye HuDepartment of Liver, Yueyang Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China.
Qingming WangDepartment of Anorectal Surgery, Baoshan Hospital of Integrated Traditional Chinese and Western Medicine, Shanghai, China. davidwqm@163.com.

Funding

"14th Five-Year Plan" Traditional Chinese Medicine Specialty and Traditional Chinese Medicine Emergency Capacity Improvement Project ZYTSZK1-82023 Shanghai Science and Technology Innovation Action Plan-Medical Innovation Research Project 23Y11921800
6 · The paper itself

Abstract

backgroundTransient receptor potential (TRP) channels are involved in the development and progression of tumors. However, their role in colorectal cancer (CRC) remains unclear, and this study aims to investigate the role of TRP-related genes in CRC.

methodsData was obtained from The Cancer Genome Atlas (TCGA) database, and analyses were conducted on the GSE14333 and GSE38832 datasets to assess the prognosis and mark TRP-related genes (TRGs). Subsequently, clustering analysis and immune infiltration analysis were performed to explore the relevant TRGs. In vitro validation of key TRGs' gene and protein expression was conducted using human colon cancer cells.

resultsCompared to normal tissues, 8 TRGs were significantly upregulated in CRC, while 11 were downregulated. TRPA1 was identified as a protective prognostic factor, whereas TRPM5 (HR = 1.349), TRPV4 (HR = 1.289), and TRPV3 (HR = 1.442) were identified as prognostic risk factors. Receiver operating characteristic (ROC) curves and Kaplan-Meier (KM) analyses yielded similar results. Additionally, lower expression of TRPA1 and higher expression of TRPV4 and TRPM5 were negatively correlated with patient prognosis, and experimental validation confirmed the underexpression of TRPA1 and overexpression of TRPV4 and TRPM5 in CRC cell lines.

conclusionThis study identifies a TRP channel-related prognosis in CRC, providing a novel approach to stratifying CRC prognosis.

Indexed as

Colorectal cancerImmune infiltrationTCGATRPTRPV4

Identifiers

PMID39154317
PMCPMC11330954

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.