Evidence map›Paper›PMID 39154087›Full record

ArticleCommunications biology2024

RRmorph-a new R package to map phenotypic evolutionary rates and patterns on 3D meshes.

Marina Melchionna, Silvia Castiglione, Giorgia Girardi, Carmela Serio, Antonella Esposito, Alessandro Mondanaro, Antonio Profico, Gabriele Sansalone, Pasquale Raia

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marina MelchionnaDiSTAR, University of Naples Federico II, Naples, Italy. marina.melchionna@unina.it.ORCID 0000-0001-7919-4431
Silvia CastiglioneDiSTAR, University of Naples Federico II, Naples, Italy.
Giorgia GirardiDiSTAR, University of Naples Federico II, Naples, Italy.
Carmela SerioDiSTAR, University of Naples Federico II, Naples, Italy.
Antonella EspositoDiSTAR, University of Naples Federico II, Naples, Italy.
Alessandro MondanaroDST, University of Florence, Florence, Italy.
Antonio ProficoDepartment of Biology, University of Pisa, Pisa, Italy.
Gabriele SansaloneDepartment of Life Sciences, University of Modena and Reggio Emilia, Modena, Italy.
Pasquale RaiaDiSTAR, University of Naples Federico II, Naples, Italy. pasquale.raia@unina.it.ORCID 0000-0002-4593-8006

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of evolutionary rates and patterns is the key to understand how natural selection shaped the current and past diversity of phenotypes. Phylogenetic comparative methods offer an array of solutions to undertake this challenging task, and help understanding phenotypic variation in full in most circumstances. However, complex, three-dimensional structures such as the skull and the brain serve disparate goals, and different portions of these phenotypes often fulfil different functions, making it hard to understand which parts truly were recruited by natural selection. In the recent past, we developed tools apt to chart evolutionary rate and patterns directly on three-dimensional shapes, according to their magnitude and direction. Here, we present further developments of these tools, which now allow to restitute the mapping of rates and patterns with full biological realism. The tools are condensed in a new R software package.

Indexed as

Biological EvolutionPhenotypePhylogenySoftwareAnimalsHumansImaging, Three-DimensionalSelection, GeneticSkull

Identifiers

PMID39154087
PMCPMC11330470

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.