Evidence map›Paper›PMID 39153475›Full record

ArticleMolecular cell2024

Nuclear PKM2 binds pre-mRNA at folded G-quadruplexes and reveals their gene regulatory role.

Dimitrios G Anastasakis, Maria Apostolidi, Khalid A Garman, Ahsan H Polash, Mubarak I Umar, Qingcai Meng, Jérémy Scutenaire, Jordan E Jarvis, Xiantao Wang, Astrid D Haase and 3 more

Abstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Dimitrios G AnastasakisRNA Molecular Biology Laboratory, NIAMS/NIH, Bethesda, MD, USA.
Maria ApostolidiDepartment of Cellular and Molecular Physiology, Yale University, New Haven, CT, USA; Systems Biology Institute, Yale University, West Haven, CT, USA.
Khalid A GarmanDermatology Branch, NIAMS/NIH, Bethesda, MD, USA.
Ahsan H PolashRNA Molecular Biology Laboratory, NIAMS/NIH, Bethesda, MD, USA.
Mubarak I UmarRNA Molecular Biology Laboratory, NIAMS/NIH, Bethesda, MD, USA.
Qingcai MengLaboratory of Cellular and Molecular Biology, NIDDK/NIH, Bethesda, MD, USA.
Jérémy ScutenaireRNA Molecular Biology Laboratory, NIAMS/NIH, Bethesda, MD, USA.
Jordan E JarvisDermatology Branch, NIAMS/NIH, Bethesda, MD, USA.
Xiantao WangRNA Molecular Biology Laboratory, NIAMS/NIH, Bethesda, MD, USA.
Astrid D HaaseLaboratory of Cellular and Molecular Biology, NIDDK/NIH, Bethesda, MD, USA.
Isaac BrownellDermatology Branch, NIAMS/NIH, Bethesda, MD, USA.
Jesse RinehartDepartment of Cellular and Molecular Physiology, Yale University, New Haven, CT, USA; Systems Biology Institute, Yale University, West Haven, CT, USA. Electronic address: jesse.rinehart@yale.edu.
Markus HafnerRNA Molecular Biology Laboratory, NIAMS/NIH, Bethesda, MD, USA. Electronic address: markus.hafner@nih.gov.

Funding

PIWI proteins and PIWI-interacting small RNAs guard the genomic integrity of germ cellsZIADK075111 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI HAASE, ASTRID · 2015 to 2025
$14.7M
Systems analysis of phenotypic switch in control of cancer invasionU54CA209992 · NCI · YALE UNIVERSITY · PI LEVCHENKO, ANDRE · 2016 to 2021
$10.1M
Dissecting the role of shuttling mRNA binding proteins in nucleocytoplasmic RNA transportZIAAR041201 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI HAFNER, MARKUS · 2014 to 2025
$5.9M
Integration of the results from systems-level determination of cis-acting elements into high-resolution maps of posttranscriptional regulatory events.ZIAAR041205 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI HAFNER, MARKUS · 2016 to 2025
$5.5M
Engineering a recoded organism to discover PTM-mediated protein bindersR01GM140481 · NIGMS · YALE UNIVERSITY · PI Farren J. Isaacs · 2020 to 2026
$3.3M
Investigation of skin cancer and skin diseaseZIAAR041224 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI BROWNELL, ISAAC · 2022 to 2025
$1.0M
Intramural NIH HHS Z99 AR999999Intramural NIH HHS ZIA AR041205NCI NIH HHS U54 CA209992NIGMS NIH HHS R01 GM140481
6 · The paper itself

Abstract

Nuclear localization of the metabolic enzyme PKM2 is widely observed in various cancer types. We identify nuclear PKM2 as a non-canonical RNA-binding protein (RBP) that specifically interacts with folded RNA G-quadruplex (rG4) structures in precursor mRNAs (pre-mRNAs). PKM2 occupancy at rG4s prevents the binding of repressive RBPs, such as HNRNPF, and promotes the expression of rG4-containing pre-mRNAs (the "rG4ome"). We observe an upregulation of the rG4ome during epithelial-to-mesenchymal transition and a negative correlation of rG4 abundance with patient survival in different cancer types. By preventing the nuclear accumulation of PKM2, we could repress the rG4ome in triple-negative breast cancer cells and reduce migration and invasion of cancer cells in vitro and in xenograft mouse models. Our data suggest that the balance of folded and unfolded rG4s controlled by RBPs impacts gene expression during tumor progression.

Indexed as

Carrier ProteinsCell NucleusEpithelial-Mesenchymal TransitionGene Expression Regulation, NeoplasticG-QuadruplexesMembrane ProteinsRNA PrecursorsThyroid Hormone-Binding ProteinsThyroid HormonesAnimalsCell Line, TumorCell MovementFemaleHEK293 CellsHeterogeneous-Nuclear Ribonucleoprotein Group F-HHumansCarrier ProteinsHeterogeneous-Nuclear Ribonucleoprotein Group F-HMembrane ProteinsPKM2 protein, humanPyruvate KinaseRNA PrecursorsThyroid Hormone-Binding ProteinsThyroid Hormonescrosslinking and immunoprecipitationG4G-quadruplexPAR-CLIPPKM2posttranscriptional gene regulationRNA-binding proteins

Identifiers

PMID39153475
PMCPMC11455610

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.